miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 3' -55.1 NC_002794.1 + 189502 0.66 0.963967
Target:  5'- cUGGGCACc-UCGugUCCGucGCGGAu -3'
miRNA:   3'- aACCUGUGcaAGCugAGGUccUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 21504 0.66 0.963967
Target:  5'- --cGAC-CGUcucCGGCUCgAGGACGGGc -3'
miRNA:   3'- aacCUGuGCAa--GCUGAGgUCCUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 120118 0.66 0.956941
Target:  5'- -cGuGACGCGcgCGACggcgaCCGGGgACGGGc -3'
miRNA:   3'- aaC-CUGUGCaaGCUGa----GGUCC-UGCCU- -5'
10874 3' -55.1 NC_002794.1 + 87041 0.66 0.953099
Target:  5'- -gGGAC-CGgcgCGGCUCgGGGcCGGGu -3'
miRNA:   3'- aaCCUGuGCaa-GCUGAGgUCCuGCCU- -5'
10874 3' -55.1 NC_002794.1 + 53642 0.66 0.94474
Target:  5'- -cGGccgaGCcgGCGUUCcgcaaacgguGCUCCAGGACGGAu -3'
miRNA:   3'- aaCC----UG--UGCAAGc---------UGAGGUCCUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 110774 0.66 0.94474
Target:  5'- cUGGAcCACGagUG-CUCCAGGACGu- -3'
miRNA:   3'- aACCU-GUGCaaGCuGAGGUCCUGCcu -5'
10874 3' -55.1 NC_002794.1 + 177704 0.67 0.935461
Target:  5'- ---uACACGUUCGAUcuacggcggUCCacGGGGCGGAu -3'
miRNA:   3'- aaccUGUGCAAGCUG---------AGG--UCCUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 148853 0.67 0.935461
Target:  5'- cUUGGGCuACGUUCGAgagcaccgcUUCCAacaacucgucuuGGGCGGGc -3'
miRNA:   3'- -AACCUG-UGCAAGCU---------GAGGU------------CCUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 105858 0.67 0.930471
Target:  5'- aUGGACgACGUgagCGGCgCCgAGGACGuGGg -3'
miRNA:   3'- aACCUG-UGCAa--GCUGaGG-UCCUGC-CU- -5'
10874 3' -55.1 NC_002794.1 + 88399 0.67 0.930471
Target:  5'- aUGGGCACGUUucaaaCGcUUCCGGuACGGAu -3'
miRNA:   3'- aACCUGUGCAA-----GCuGAGGUCcUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 38619 0.67 0.930471
Target:  5'- -cGGGCGCGUccCGACUcgCCGGugcggcgcGACGGAg -3'
miRNA:   3'- aaCCUGUGCAa-GCUGA--GGUC--------CUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 23439 0.67 0.925248
Target:  5'- gUUGGAaaacgugaugUACGUccggaUCGACgUCGGGGCGGAg -3'
miRNA:   3'- -AACCU----------GUGCA-----AGCUGaGGUCCUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 19454 0.67 0.91979
Target:  5'- -cGGGCACGagCGGCggCGGcGGCGGGa -3'
miRNA:   3'- aaCCUGUGCaaGCUGagGUC-CUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 176997 0.68 0.908174
Target:  5'- -gGGACACGagagacgUUgagGACUCCGGGAccuuCGGAg -3'
miRNA:   3'- aaCCUGUGCa------AG---CUGAGGUCCU----GCCU- -5'
10874 3' -55.1 NC_002794.1 + 112212 0.68 0.895635
Target:  5'- gUGGAgCACGgcCcGCUCCAGGGCGu- -3'
miRNA:   3'- aACCU-GUGCaaGcUGAGGUCCUGCcu -5'
10874 3' -55.1 NC_002794.1 + 149509 0.68 0.882194
Target:  5'- aUGGugACGgggUCGuCgCCGGGAgCGGAc -3'
miRNA:   3'- aACCugUGCa--AGCuGaGGUCCU-GCCU- -5'
10874 3' -55.1 NC_002794.1 + 14610 0.68 0.882194
Target:  5'- -cGGGCACcg-CGACggggCCGGaGACGGGg -3'
miRNA:   3'- aaCCUGUGcaaGCUGa---GGUC-CUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 55318 0.7 0.811582
Target:  5'- -cGGGCGCGggCGGCuUCCgAGGAccCGGGg -3'
miRNA:   3'- aaCCUGUGCaaGCUG-AGG-UCCU--GCCU- -5'
10874 3' -55.1 NC_002794.1 + 142483 0.71 0.77574
Target:  5'- gUGGACGCGUgCGGCgCCGGcagcgacguGGCGGAa -3'
miRNA:   3'- aACCUGUGCAaGCUGaGGUC---------CUGCCU- -5'
10874 3' -55.1 NC_002794.1 + 89972 0.72 0.705542
Target:  5'- -cGGACcguggugcgccgGCGUUCGACcggugcgcacgaucUUCGGGACGGAg -3'
miRNA:   3'- aaCCUG------------UGCAAGCUG--------------AGGUCCUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.