miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 65158 0.66 0.938615
Target:  5'- -uCGcCGUCCcgUCcguGGCGCCGAGaccgGCGGg -3'
miRNA:   3'- uuGC-GCAGGa-AG---UCGUGGUUCg---CGCC- -5'
10874 5' -56.2 NC_002794.1 + 109525 0.66 0.938615
Target:  5'- -cCGCGcUCgUUCGGCGUCGGGCcggGCGGa -3'
miRNA:   3'- uuGCGC-AGgAAGUCGUGGUUCG---CGCC- -5'
10874 5' -56.2 NC_002794.1 + 147948 0.66 0.933794
Target:  5'- uACGCGUaCUcUCcgGGCuCCGAGCGCGu -3'
miRNA:   3'- uUGCGCA-GGaAG--UCGuGGUUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 95122 0.66 0.933794
Target:  5'- gGGCGCucgaUCCUgaAGCGCUu-GCGCGGg -3'
miRNA:   3'- -UUGCGc---AGGAagUCGUGGuuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 126382 0.66 0.933794
Target:  5'- gGGCGcCGgggCCUgcgCGGCGgCGuGCGCGGc -3'
miRNA:   3'- -UUGC-GCa--GGAa--GUCGUgGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 186836 0.66 0.933794
Target:  5'- gAAgGCGcCCgaCAGCGCgCGGGCGCu- -3'
miRNA:   3'- -UUgCGCaGGaaGUCGUG-GUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 54828 0.66 0.933299
Target:  5'- -gUGCGUCaugUUCGGCGgcacCCAacgcccguaggccGGCGCGGg -3'
miRNA:   3'- uuGCGCAGg--AAGUCGU----GGU-------------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 83020 0.66 0.92874
Target:  5'- uGCGCcccGUCC--CGGCGCCGGGCggcacccacgGCGGa -3'
miRNA:   3'- uUGCG---CAGGaaGUCGUGGUUCG----------CGCC- -5'
10874 5' -56.2 NC_002794.1 + 38620 0.66 0.92874
Target:  5'- gGGCGCGUCCcgacuCGCCG-GUGCGGc -3'
miRNA:   3'- -UUGCGCAGGaagucGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 119495 0.66 0.927701
Target:  5'- -cUGCGUCCUcggggucgucggCGGCGCgGAGCcggccGCGGa -3'
miRNA:   3'- uuGCGCAGGAa-----------GUCGUGgUUCG-----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 140924 0.66 0.927701
Target:  5'- aGGCGCGcugCCUgc-GCACCAucgacgaguaucGCGCGGa -3'
miRNA:   3'- -UUGCGCa--GGAaguCGUGGUu-----------CGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 102652 0.66 0.923453
Target:  5'- cGGCGCGcUCggaggAGCuGCCGAGCGUGGg -3'
miRNA:   3'- -UUGCGCaGGaag--UCG-UGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 125229 0.66 0.923453
Target:  5'- -cCGCGUCa-UCAGCgACCAcgaGGCGCu- -3'
miRNA:   3'- uuGCGCAGgaAGUCG-UGGU---UCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 195241 0.66 0.923453
Target:  5'- --gGCGUCac-CAGCACCGaccaccccGGCGgGGa -3'
miRNA:   3'- uugCGCAGgaaGUCGUGGU--------UCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 94960 0.66 0.923453
Target:  5'- uAugGCGUCCU--GGaGCCGA-CGCGGg -3'
miRNA:   3'- -UugCGCAGGAagUCgUGGUUcGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 144425 0.66 0.923453
Target:  5'- --aGCGcCCUgCuGCGCCGAGUGCa- -3'
miRNA:   3'- uugCGCaGGAaGuCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 79286 0.66 0.923453
Target:  5'- -cCGCGUCUUUUccuGCgugGCCGAGCGCc- -3'
miRNA:   3'- uuGCGCAGGAAGu--CG---UGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 190413 0.66 0.922911
Target:  5'- cGGCGCcccaccaGUCCacCAGCAgCAGGUGCGa -3'
miRNA:   3'- -UUGCG-------CAGGaaGUCGUgGUUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 82628 0.66 0.917933
Target:  5'- uGCGCGaacucaUCCgcCGGCGCCAgaAGCGCc- -3'
miRNA:   3'- uUGCGC------AGGaaGUCGUGGU--UCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 100751 0.66 0.917933
Target:  5'- gAGCGCGUCUaUC-GCugGCCGGuCGCGGa -3'
miRNA:   3'- -UUGCGCAGGaAGuCG--UGGUUcGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.