miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 140924 0.66 0.927701
Target:  5'- aGGCGCGcugCCUgc-GCACCAucgacgaguaucGCGCGGa -3'
miRNA:   3'- -UUGCGCa--GGAaguCGUGGUu-----------CGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 83020 0.66 0.92874
Target:  5'- uGCGCcccGUCC--CGGCGCCGGGCggcacccacgGCGGa -3'
miRNA:   3'- uUGCG---CAGGaaGUCGUGGUUCG----------CGCC- -5'
10874 5' -56.2 NC_002794.1 + 38620 0.66 0.92874
Target:  5'- gGGCGCGUCCcgacuCGCCG-GUGCGGc -3'
miRNA:   3'- -UUGCGCAGGaagucGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 54828 0.66 0.933299
Target:  5'- -gUGCGUCaugUUCGGCGgcacCCAacgcccguaggccGGCGCGGg -3'
miRNA:   3'- uuGCGCAGg--AAGUCGU----GGU-------------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 119495 0.66 0.927701
Target:  5'- -cUGCGUCCUcggggucgucggCGGCGCgGAGCcggccGCGGa -3'
miRNA:   3'- uuGCGCAGGAa-----------GUCGUGgUUCG-----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 102652 0.66 0.923453
Target:  5'- cGGCGCGcUCggaggAGCuGCCGAGCGUGGg -3'
miRNA:   3'- -UUGCGCaGGaag--UCG-UGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 153401 0.67 0.899986
Target:  5'- -uCGCGagCUgucgCgAGCGCCGcGCGCGGa -3'
miRNA:   3'- uuGCGCagGAa---G-UCGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 80409 0.67 0.899986
Target:  5'- -cCGCGgCCcaggUGGCGCCGGGCGgGGc -3'
miRNA:   3'- uuGCGCaGGaa--GUCGUGGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 100513 0.67 0.89615
Target:  5'- -gUGCGUCUguuauccggucggCGGCACCGAGgagcaGCGGg -3'
miRNA:   3'- uuGCGCAGGaa-----------GUCGUGGUUCg----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 116407 0.67 0.899986
Target:  5'- uGugGCGgggcgCgAGCACCAgGGCGCGGg -3'
miRNA:   3'- -UugCGCaggaaG-UCGUGGU-UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 112852 0.67 0.893547
Target:  5'- cGGCGCG-CCgcagCAGCugCugcAGCGCGc -3'
miRNA:   3'- -UUGCGCaGGaa--GUCGugGu--UCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 184569 0.67 0.893547
Target:  5'- cACGCGccgCCgcggCGGCggcgGCCAcGCGCGGc -3'
miRNA:   3'- uUGCGCa--GGaa--GUCG----UGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 111756 0.67 0.899986
Target:  5'- --gGCG-CCgcgCGGCGCCGucGGgGCGGg -3'
miRNA:   3'- uugCGCaGGaa-GUCGUGGU--UCgCGCC- -5'
10874 5' -56.2 NC_002794.1 + 123777 0.67 0.899986
Target:  5'- gGACGCcUCCgugUUggaggcgguGGCGCCGuucgggGGCGCGGa -3'
miRNA:   3'- -UUGCGcAGGa--AG---------UCGUGGU------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 113151 0.67 0.899986
Target:  5'- gGGCGCGUCagcgugUAGCGC---GCGCGGg -3'
miRNA:   3'- -UUGCGCAGgaa---GUCGUGguuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 150376 0.67 0.899986
Target:  5'- -cCGCGUCUUUCuacGCucCCGGGCGCc- -3'
miRNA:   3'- uuGCGCAGGAAGu--CGu-GGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 125824 0.67 0.906197
Target:  5'- -cUGCGUCC-UCGGCGCCcugcugcuGCGCu- -3'
miRNA:   3'- uuGCGCAGGaAGUCGUGGuu------CGCGcc -5'
10874 5' -56.2 NC_002794.1 + 50033 0.67 0.906197
Target:  5'- cAGCGCGUCC-UC-GCGCUu-GCgGCGGc -3'
miRNA:   3'- -UUGCGCAGGaAGuCGUGGuuCG-CGCC- -5'
10874 5' -56.2 NC_002794.1 + 14274 0.67 0.906197
Target:  5'- cGAgGUGUUCggcuggagcgUCAGCGuCgAGGCGCGGg -3'
miRNA:   3'- -UUgCGCAGGa---------AGUCGU-GgUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 48597 0.67 0.893547
Target:  5'- cGGCGCGUCgCcgUCGGCgucgGCCucAGaCGCGGa -3'
miRNA:   3'- -UUGCGCAG-Ga-AGUCG----UGGu-UC-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.