Results 1 - 20 of 114 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
10874 | 5' | -56.2 | NC_002794.1 | + | 30504 | 1.07 | 0.0045 |
Target: 5'- cAACGCGUCCUUCAGCACCAAGCGCGGc -3' miRNA: 3'- -UUGCGCAGGAAGUCGUGGUUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 185160 | 0.78 | 0.327606 |
Target: 5'- cGACGCGUCCUccgcCGGCGC--GGCGCGGu -3' miRNA: 3'- -UUGCGCAGGAa---GUCGUGguUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 61874 | 0.77 | 0.381057 |
Target: 5'- cGCGCG-CCgucgUCGGCGCCGcgcggcgAGCGCGGc -3' miRNA: 3'- uUGCGCaGGa---AGUCGUGGU-------UCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 128248 | 0.75 | 0.487724 |
Target: 5'- aGACGguCGUCUggucgcggUCGGgGCCGAGCGCGGa -3' miRNA: 3'- -UUGC--GCAGGa-------AGUCgUGGUUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 142406 | 0.75 | 0.478355 |
Target: 5'- aGGCgGCGUCgg-CGGCGCCGGGCGCGa -3' miRNA: 3'- -UUG-CGCAGgaaGUCGUGGUUCGCGCc -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 113657 | 0.74 | 0.506715 |
Target: 5'- --gGCGUCC-UCGGCGuCC-AGCGCGGc -3' miRNA: 3'- uugCGCAGGaAGUCGU-GGuUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 119717 | 0.74 | 0.555456 |
Target: 5'- cAACgGCGg-CUUCGGCACCGGGCGCu- -3' miRNA: 3'- -UUG-CGCagGAAGUCGUGGUUCGCGcc -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 55787 | 0.74 | 0.516328 |
Target: 5'- --gGCGUuggCCUccagcgagcgCAGCGCCGGGCGCGGg -3' miRNA: 3'- uugCGCA---GGAa---------GUCGUGGUUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 121965 | 0.73 | 0.56538 |
Target: 5'- gAGCGC-UCCgugCGGCucggucccGCCGAGCGCGGc -3' miRNA: 3'- -UUGCGcAGGaa-GUCG--------UGGUUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 112306 | 0.72 | 0.66603 |
Target: 5'- -cCGgGUCCgacuUCGGCGCCGacGGCGgGGa -3' miRNA: 3'- uuGCgCAGGa---AGUCGUGGU--UCGCgCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 112099 | 0.72 | 0.635763 |
Target: 5'- uGCGCGUCCa--GGCGCgGccgggacgacGGCGCGGg -3' miRNA: 3'- uUGCGCAGGaagUCGUGgU----------UCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 35582 | 0.72 | 0.655957 |
Target: 5'- --gGCGUUCUUCcGCACCGAGCugaGCGa -3' miRNA: 3'- uugCGCAGGAAGuCGUGGUUCG---CGCc -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 122013 | 0.72 | 0.615558 |
Target: 5'- cACGuCGUCuuCUUCGGCGCCGGGCGUc- -3' miRNA: 3'- uUGC-GCAG--GAAGUCGUGGUUCGCGcc -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 137649 | 0.72 | 0.625658 |
Target: 5'- gGGCGCcgggCCUcCGGCGCCGcuGGUGCGGa -3' miRNA: 3'- -UUGCGca--GGAaGUCGUGGU--UCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 90353 | 0.72 | 0.635763 |
Target: 5'- -gUGCGUCCUgu-GCACCGuGCGCGu -3' miRNA: 3'- uuGCGCAGGAaguCGUGGUuCGCGCc -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 112335 | 0.72 | 0.66603 |
Target: 5'- gAGCGCGccggCCggCGGCGCCGgcGGCGgGGc -3' miRNA: 3'- -UUGCGCa---GGaaGUCGUGGU--UCGCgCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 66832 | 0.71 | 0.715825 |
Target: 5'- cGGCGCGacUCCg--GGCGCCGccgucGGCGCGGc -3' miRNA: 3'- -UUGCGC--AGGaagUCGUGGU-----UCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 67386 | 0.71 | 0.715825 |
Target: 5'- gAACGCGUCggcgccagcgUCGGCGCCA-GCGuCGGc -3' miRNA: 3'- -UUGCGCAGga--------AGUCGUGGUuCGC-GCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 134110 | 0.71 | 0.696055 |
Target: 5'- cGACGgacccccucCGUCCgaCGGCGCggCGAGCGCGGa -3' miRNA: 3'- -UUGC---------GCAGGaaGUCGUG--GUUCGCGCC- -5' |
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10874 | 5' | -56.2 | NC_002794.1 | + | 65296 | 0.71 | 0.70597 |
Target: 5'- cGGCGuCGUCCUcgagacgaCAGCACCAacuccgccuGGCGCGa -3' miRNA: 3'- -UUGC-GCAGGAa-------GUCGUGGU---------UCGCGCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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