miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 30504 1.07 0.0045
Target:  5'- cAACGCGUCCUUCAGCACCAAGCGCGGc -3'
miRNA:   3'- -UUGCGCAGGAAGUCGUGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 185160 0.78 0.327606
Target:  5'- cGACGCGUCCUccgcCGGCGC--GGCGCGGu -3'
miRNA:   3'- -UUGCGCAGGAa---GUCGUGguUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 61874 0.77 0.381057
Target:  5'- cGCGCG-CCgucgUCGGCGCCGcgcggcgAGCGCGGc -3'
miRNA:   3'- uUGCGCaGGa---AGUCGUGGU-------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 142406 0.75 0.478355
Target:  5'- aGGCgGCGUCgg-CGGCGCCGGGCGCGa -3'
miRNA:   3'- -UUG-CGCAGgaaGUCGUGGUUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 128248 0.75 0.487724
Target:  5'- aGACGguCGUCUggucgcggUCGGgGCCGAGCGCGGa -3'
miRNA:   3'- -UUGC--GCAGGa-------AGUCgUGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 113657 0.74 0.506715
Target:  5'- --gGCGUCC-UCGGCGuCC-AGCGCGGc -3'
miRNA:   3'- uugCGCAGGaAGUCGU-GGuUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 55787 0.74 0.516328
Target:  5'- --gGCGUuggCCUccagcgagcgCAGCGCCGGGCGCGGg -3'
miRNA:   3'- uugCGCA---GGAa---------GUCGUGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 119717 0.74 0.555456
Target:  5'- cAACgGCGg-CUUCGGCACCGGGCGCu- -3'
miRNA:   3'- -UUG-CGCagGAAGUCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 121965 0.73 0.56538
Target:  5'- gAGCGC-UCCgugCGGCucggucccGCCGAGCGCGGc -3'
miRNA:   3'- -UUGCGcAGGaa-GUCG--------UGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 122013 0.72 0.615558
Target:  5'- cACGuCGUCuuCUUCGGCGCCGGGCGUc- -3'
miRNA:   3'- uUGC-GCAG--GAAGUCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 137649 0.72 0.625658
Target:  5'- gGGCGCcgggCCUcCGGCGCCGcuGGUGCGGa -3'
miRNA:   3'- -UUGCGca--GGAaGUCGUGGU--UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 90353 0.72 0.635763
Target:  5'- -gUGCGUCCUgu-GCACCGuGCGCGu -3'
miRNA:   3'- uuGCGCAGGAaguCGUGGUuCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 112099 0.72 0.635763
Target:  5'- uGCGCGUCCa--GGCGCgGccgggacgacGGCGCGGg -3'
miRNA:   3'- uUGCGCAGGaagUCGUGgU----------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 35582 0.72 0.655957
Target:  5'- --gGCGUUCUUCcGCACCGAGCugaGCGa -3'
miRNA:   3'- uugCGCAGGAAGuCGUGGUUCG---CGCc -5'
10874 5' -56.2 NC_002794.1 + 112306 0.72 0.66603
Target:  5'- -cCGgGUCCgacuUCGGCGCCGacGGCGgGGa -3'
miRNA:   3'- uuGCgCAGGa---AGUCGUGGU--UCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 112335 0.72 0.66603
Target:  5'- gAGCGCGccggCCggCGGCGCCGgcGGCGgGGc -3'
miRNA:   3'- -UUGCGCa---GGaaGUCGUGGU--UCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 134110 0.71 0.696055
Target:  5'- cGACGgacccccucCGUCCgaCGGCGCggCGAGCGCGGa -3'
miRNA:   3'- -UUGC---------GCAGGaaGUCGUG--GUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 65296 0.71 0.70597
Target:  5'- cGGCGuCGUCCUcgagacgaCAGCACCAacuccgccuGGCGCGa -3'
miRNA:   3'- -UUGC-GCAGGAa-------GUCGUGGU---------UCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 67386 0.71 0.715825
Target:  5'- gAACGCGUCggcgccagcgUCGGCGCCA-GCGuCGGc -3'
miRNA:   3'- -UUGCGCAGga--------AGUCGUGGUuCGC-GCC- -5'
10874 5' -56.2 NC_002794.1 + 66832 0.71 0.715825
Target:  5'- cGGCGCGacUCCg--GGCGCCGccgucGGCGCGGc -3'
miRNA:   3'- -UUGCGC--AGGaagUCGUGGU-----UCGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.