miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 50780 0.7 0.744935
Target:  5'- cGGCGCGUCUcgggCGGCGCCuccucgcccGGCGuCGGg -3'
miRNA:   3'- -UUGCGCAGGaa--GUCGUGGu--------UCGC-GCC- -5'
10874 5' -56.2 NC_002794.1 + 187939 0.7 0.744935
Target:  5'- -uCGCGUCacgCGugcGCGCgCGAGCGCGGg -3'
miRNA:   3'- uuGCGCAGgaaGU---CGUG-GUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 844 0.7 0.754458
Target:  5'- cGGCGCGUgCgUUCGGC-CCAGcGCGCGc -3'
miRNA:   3'- -UUGCGCA-GgAAGUCGuGGUU-CGCGCc -5'
10874 5' -56.2 NC_002794.1 + 117605 0.7 0.763875
Target:  5'- cACGCGUCCaggaacUCgccgagcgacagGGCGCCGAccGCGCGGc -3'
miRNA:   3'- uUGCGCAGGa-----AG------------UCGUGGUU--CGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 94266 0.7 0.763875
Target:  5'- cGCGCGUCauuugcgCGGCGcggcCCGAGCGgGGg -3'
miRNA:   3'- uUGCGCAGgaa----GUCGU----GGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 91279 0.7 0.772254
Target:  5'- cGGCGCGgCCUguacgugUCGGCGCUGAGCGaGGc -3'
miRNA:   3'- -UUGCGCaGGA-------AGUCGUGGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 96987 0.7 0.773179
Target:  5'- gAGCGCGUCacg-GGCACCGAGUG-GGu -3'
miRNA:   3'- -UUGCGCAGgaagUCGUGGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 185751 0.7 0.773179
Target:  5'- cACGCGUCC---AGcCGCCG-GCGCGGc -3'
miRNA:   3'- uUGCGCAGGaagUC-GUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 151188 0.7 0.773179
Target:  5'- cGCGCGUCUUUCAGUGUCu-GCGCGc -3'
miRNA:   3'- uUGCGCAGGAAGUCGUGGuuCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 92254 0.7 0.773179
Target:  5'- cGGCgGCGUCgCUggcggCGGCGCCGGGCGaGGc -3'
miRNA:   3'- -UUG-CGCAG-GAa----GUCGUGGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 185405 0.69 0.778703
Target:  5'- gGGCGCGggcccgaccgCCgucgacucgacgCGGCGCCAuGCGCGGa -3'
miRNA:   3'- -UUGCGCa---------GGaa----------GUCGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 47951 0.69 0.781447
Target:  5'- cGCGCGUCC--CGGCGCCGGcugggcgaccgccGCGCGc -3'
miRNA:   3'- uUGCGCAGGaaGUCGUGGUU-------------CGCGCc -5'
10874 5' -56.2 NC_002794.1 + 59995 0.69 0.782359
Target:  5'- uGCGCcaGUUCacCGGCGCCGAGCGCa- -3'
miRNA:   3'- uUGCG--CAGGaaGUCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 124130 0.69 0.782359
Target:  5'- gAGCGCGUCUc-CGGCGCCcGGgaGCGGu -3'
miRNA:   3'- -UUGCGCAGGaaGUCGUGGuUCg-CGCC- -5'
10874 5' -56.2 NC_002794.1 + 115878 0.69 0.791409
Target:  5'- cGGgGCGUCCgg-GGCGuCCGcggAGCGCGGg -3'
miRNA:   3'- -UUgCGCAGGaagUCGU-GGU---UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 71341 0.69 0.791409
Target:  5'- cGAUGuCGUCCgccaggCGGCGCagCAGGUGCGGc -3'
miRNA:   3'- -UUGC-GCAGGaa----GUCGUG--GUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 65806 0.69 0.791409
Target:  5'- uGACGaCGUCCguuucgaUCAGCGCCGAGCu--- -3'
miRNA:   3'- -UUGC-GCAGGa------AGUCGUGGUUCGcgcc -5'
10874 5' -56.2 NC_002794.1 + 101008 0.69 0.800318
Target:  5'- -cCGCGggCCUUCcuGUcgggggacgcggGCCGGGCGCGGg -3'
miRNA:   3'- uuGCGCa-GGAAGu-CG------------UGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 192348 0.69 0.815119
Target:  5'- -uCGCGgaCCU-CGGCcuccgccgccgccgACCGAGCGCGGg -3'
miRNA:   3'- uuGCGCa-GGAaGUCG--------------UGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 47408 0.69 0.817684
Target:  5'- aAGC-CG-CCgUCGGCGCCGucGCGCGGa -3'
miRNA:   3'- -UUGcGCaGGaAGUCGUGGUu-CGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.