miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 38471 0.66 0.917933
Target:  5'- cGGCGCGcCCUUUaugGGCGgaggAAGCGCGGc -3'
miRNA:   3'- -UUGCGCaGGAAG---UCGUgg--UUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 100751 0.66 0.917933
Target:  5'- gAGCGCGUCUaUC-GCugGCCGGuCGCGGa -3'
miRNA:   3'- -UUGCGCAGGaAGuCG--UGGUUcGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 82628 0.66 0.917933
Target:  5'- uGCGCGaacucaUCCgcCGGCGCCAgaAGCGCc- -3'
miRNA:   3'- uUGCGC------AGGaaGUCGUGGU--UCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 113874 0.66 0.917933
Target:  5'- aGGCGCGcucggCCg-CGGCGCgCGucGGCGCGGu -3'
miRNA:   3'- -UUGCGCa----GGaaGUCGUG-GU--UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 182512 0.66 0.91218
Target:  5'- uACGCGUagcggAGCACCGuccaccAGCGCGGc -3'
miRNA:   3'- uUGCGCAggaagUCGUGGU------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 40293 0.66 0.91218
Target:  5'- uACGCGUCCgUC-GCGCCGAG-GaGGg -3'
miRNA:   3'- uUGCGCAGGaAGuCGUGGUUCgCgCC- -5'
10874 5' -56.2 NC_002794.1 + 125824 0.67 0.906197
Target:  5'- -cUGCGUCC-UCGGCGCCcugcugcuGCGCu- -3'
miRNA:   3'- uuGCGCAGGaAGUCGUGGuu------CGCGcc -5'
10874 5' -56.2 NC_002794.1 + 50033 0.67 0.906197
Target:  5'- cAGCGCGUCC-UC-GCGCUu-GCgGCGGc -3'
miRNA:   3'- -UUGCGCAGGaAGuCGUGGuuCG-CGCC- -5'
10874 5' -56.2 NC_002794.1 + 14274 0.67 0.906197
Target:  5'- cGAgGUGUUCggcuggagcgUCAGCGuCgAGGCGCGGg -3'
miRNA:   3'- -UUgCGCAGGa---------AGUCGU-GgUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 65968 0.67 0.906197
Target:  5'- cGGCGUcUCCUcCGGCACCAAcgucgaacuGgGCGGu -3'
miRNA:   3'- -UUGCGcAGGAaGUCGUGGUU---------CgCGCC- -5'
10874 5' -56.2 NC_002794.1 + 116407 0.67 0.899986
Target:  5'- uGugGCGgggcgCgAGCACCAgGGCGCGGg -3'
miRNA:   3'- -UugCGCaggaaG-UCGUGGU-UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 80409 0.67 0.899986
Target:  5'- -cCGCGgCCcaggUGGCGCCGGGCGgGGc -3'
miRNA:   3'- uuGCGCaGGaa--GUCGUGGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 153401 0.67 0.899986
Target:  5'- -uCGCGagCUgucgCgAGCGCCGcGCGCGGa -3'
miRNA:   3'- uuGCGCagGAa---G-UCGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 111756 0.67 0.899986
Target:  5'- --gGCG-CCgcgCGGCGCCGucGGgGCGGg -3'
miRNA:   3'- uugCGCaGGaa-GUCGUGGU--UCgCGCC- -5'
10874 5' -56.2 NC_002794.1 + 123777 0.67 0.899986
Target:  5'- gGACGCcUCCgugUUggaggcgguGGCGCCGuucgggGGCGCGGa -3'
miRNA:   3'- -UUGCGcAGGa--AG---------UCGUGGU------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 113151 0.67 0.899986
Target:  5'- gGGCGCGUCagcgugUAGCGC---GCGCGGg -3'
miRNA:   3'- -UUGCGCAGgaa---GUCGUGguuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 150376 0.67 0.899986
Target:  5'- -cCGCGUCUUUCuacGCucCCGGGCGCc- -3'
miRNA:   3'- uuGCGCAGGAAGu--CGu-GGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 100513 0.67 0.89615
Target:  5'- -gUGCGUCUguuauccggucggCGGCACCGAGgagcaGCGGg -3'
miRNA:   3'- uuGCGCAGGaa-----------GUCGUGGUUCg----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 184569 0.67 0.893547
Target:  5'- cACGCGccgCCgcggCGGCggcgGCCAcGCGCGGc -3'
miRNA:   3'- uUGCGCa--GGaa--GUCG----UGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 48597 0.67 0.893547
Target:  5'- cGGCGCGUCgCcgUCGGCgucgGCCucAGaCGCGGa -3'
miRNA:   3'- -UUGCGCAG-Ga-AGUCG----UGGu-UC-GCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.