miRNA display CGI


Results 41 - 60 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 184569 0.67 0.893547
Target:  5'- cACGCGccgCCgcggCGGCggcgGCCAcGCGCGGc -3'
miRNA:   3'- uUGCGCa--GGaa--GUCG----UGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 112852 0.67 0.893547
Target:  5'- cGGCGCG-CCgcagCAGCugCugcAGCGCGc -3'
miRNA:   3'- -UUGCGCaGGaa--GUCGugGu--UCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 141304 0.67 0.886886
Target:  5'- uGGCGCG-CCggcgaCGGCACCG-GCGuCGGc -3'
miRNA:   3'- -UUGCGCaGGaa---GUCGUGGUuCGC-GCC- -5'
10874 5' -56.2 NC_002794.1 + 43291 0.67 0.886886
Target:  5'- --gGCuGUCCUcCAGCACCcGG-GCGGu -3'
miRNA:   3'- uugCG-CAGGAaGUCGUGGuUCgCGCC- -5'
10874 5' -56.2 NC_002794.1 + 184828 0.67 0.886886
Target:  5'- cACGCGUCCgggcGCACCGcGCaGCGa -3'
miRNA:   3'- uUGCGCAGGaaguCGUGGUuCG-CGCc -5'
10874 5' -56.2 NC_002794.1 + 41660 0.67 0.886886
Target:  5'- gAACGUGUCCUuaUCGGgcCGCCGcaggAGCGCccGGa -3'
miRNA:   3'- -UUGCGCAGGA--AGUC--GUGGU----UCGCG--CC- -5'
10874 5' -56.2 NC_002794.1 + 83311 0.67 0.880006
Target:  5'- -uCGCGaCCcUCGGCACCcuGCGCu- -3'
miRNA:   3'- uuGCGCaGGaAGUCGUGGuuCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 116797 0.67 0.880006
Target:  5'- -uUGCGagCCggcUCgGGCGCCGuAGCGCGGg -3'
miRNA:   3'- uuGCGCa-GGa--AG-UCGUGGU-UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 67203 0.67 0.880006
Target:  5'- --aGCGUCCgggcggugcgcUCGGCGCCGGGCGg-- -3'
miRNA:   3'- uugCGCAGGa----------AGUCGUGGUUCGCgcc -5'
10874 5' -56.2 NC_002794.1 + 106938 0.67 0.875774
Target:  5'- aGACGCGggCCggCGGCGCCugGAgacacgcgucgccucGCGCGGc -3'
miRNA:   3'- -UUGCGCa-GGaaGUCGUGG--UU---------------CGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 11287 0.67 0.87291
Target:  5'- uGGCGCGUCCgcaacacCAGCcaggucuucgugGCCA-GCGCGa -3'
miRNA:   3'- -UUGCGCAGGaa-----GUCG------------UGGUuCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 48918 0.67 0.87291
Target:  5'- -cCGC-UCCgcagcgcCAGCGCCAGGCGCu- -3'
miRNA:   3'- uuGCGcAGGaa-----GUCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 67860 0.68 0.865605
Target:  5'- cGCGCGUCaccCGGCGCCAucccgaAGCuccgaGCGGa -3'
miRNA:   3'- uUGCGCAGgaaGUCGUGGU------UCG-----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 19422 0.68 0.865605
Target:  5'- gGGCGCGcCCUccUCcGCgACCAGGCcccgaGCGGg -3'
miRNA:   3'- -UUGCGCaGGA--AGuCG-UGGUUCG-----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 121571 0.68 0.865605
Target:  5'- -uCGgGaUCUUCAGCGugaCGGGCGCGGg -3'
miRNA:   3'- uuGCgCaGGAAGUCGUg--GUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 30179 0.68 0.865605
Target:  5'- uACG-GUUCUUCAGCGCCcggcagauguaGGGCGUGa -3'
miRNA:   3'- uUGCgCAGGAAGUCGUGG-----------UUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 89897 0.68 0.865605
Target:  5'- cGACGuCG-CCUUUcaucggcccguuGGCGCUAgaGGCGCGGg -3'
miRNA:   3'- -UUGC-GCaGGAAG------------UCGUGGU--UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 145398 0.68 0.858094
Target:  5'- uGGCGCG-CCgcgCGGC-CUuaAAGCGCGGc -3'
miRNA:   3'- -UUGCGCaGGaa-GUCGuGG--UUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 107301 0.68 0.858094
Target:  5'- cGACGC-UCCUcgCgggGGCGCCGuccGCGCGGu -3'
miRNA:   3'- -UUGCGcAGGAa-G---UCGUGGUu--CGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 92995 0.68 0.858094
Target:  5'- cAGCGUGUUCUUCaAGCGCgAcguggugcAGCgGCGGa -3'
miRNA:   3'- -UUGCGCAGGAAG-UCGUGgU--------UCG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.