miRNA display CGI


Results 1 - 20 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 844 0.7 0.754458
Target:  5'- cGGCGCGUgCgUUCGGC-CCAGcGCGCGc -3'
miRNA:   3'- -UUGCGCA-GgAAGUCGuGGUU-CGCGCc -5'
10874 5' -56.2 NC_002794.1 + 11287 0.67 0.87291
Target:  5'- uGGCGCGUCCgcaacacCAGCcaggucuucgugGCCA-GCGCGa -3'
miRNA:   3'- -UUGCGCAGGaa-----GUCG------------UGGUuCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 12595 0.68 0.842481
Target:  5'- -cUGCGUCCccacgCuGCGCCAccAGCGCGu -3'
miRNA:   3'- uuGCGCAGGaa---GuCGUGGU--UCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 14274 0.67 0.906197
Target:  5'- cGAgGUGUUCggcuggagcgUCAGCGuCgAGGCGCGGg -3'
miRNA:   3'- -UUgCGCAGGa---------AGUCGU-GgUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 19422 0.68 0.865605
Target:  5'- gGGCGCGcCCUccUCcGCgACCAGGCcccgaGCGGg -3'
miRNA:   3'- -UUGCGCaGGA--AGuCG-UGGUUCG-----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 30179 0.68 0.865605
Target:  5'- uACG-GUUCUUCAGCGCCcggcagauguaGGGCGUGa -3'
miRNA:   3'- uUGCgCAGGAAGUCGUGG-----------UUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 30504 1.07 0.0045
Target:  5'- cAACGCGUCCUUCAGCACCAAGCGCGGc -3'
miRNA:   3'- -UUGCGCAGGAAGUCGUGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 35582 0.72 0.655957
Target:  5'- --gGCGUUCUUCcGCACCGAGCugaGCGa -3'
miRNA:   3'- uugCGCAGGAAGuCGUGGUUCG---CGCc -5'
10874 5' -56.2 NC_002794.1 + 37729 0.68 0.834392
Target:  5'- -cCGCGagCggCGGCGCCGccggcggcGGCGCGGc -3'
miRNA:   3'- uuGCGCagGaaGUCGUGGU--------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 38471 0.66 0.917933
Target:  5'- cGGCGCGcCCUUUaugGGCGgaggAAGCGCGGc -3'
miRNA:   3'- -UUGCGCaGGAAG---UCGUgg--UUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 38620 0.66 0.92874
Target:  5'- gGGCGCGUCCcgacuCGCCG-GUGCGGc -3'
miRNA:   3'- -UUGCGCAGGaagucGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 40293 0.66 0.91218
Target:  5'- uACGCGUCCgUC-GCGCCGAG-GaGGg -3'
miRNA:   3'- uUGCGCAGGaAGuCGUGGUUCgCgCC- -5'
10874 5' -56.2 NC_002794.1 + 41660 0.67 0.886886
Target:  5'- gAACGUGUCCUuaUCGGgcCGCCGcaggAGCGCccGGa -3'
miRNA:   3'- -UUGCGCAGGA--AGUC--GUGGU----UCGCG--CC- -5'
10874 5' -56.2 NC_002794.1 + 43291 0.67 0.886886
Target:  5'- --gGCuGUCCUcCAGCACCcGG-GCGGu -3'
miRNA:   3'- uugCG-CAGGAaGUCGUGGuUCgCGCC- -5'
10874 5' -56.2 NC_002794.1 + 47408 0.69 0.817684
Target:  5'- aAGC-CG-CCgUCGGCGCCGucGCGCGGa -3'
miRNA:   3'- -UUGcGCaGGaAGUCGUGGUu-CGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 47951 0.69 0.781447
Target:  5'- cGCGCGUCC--CGGCGCCGGcugggcgaccgccGCGCGc -3'
miRNA:   3'- uUGCGCAGGaaGUCGUGGUU-------------CGCGCc -5'
10874 5' -56.2 NC_002794.1 + 48597 0.67 0.893547
Target:  5'- cGGCGCGUCgCcgUCGGCgucgGCCucAGaCGCGGa -3'
miRNA:   3'- -UUGCGCAG-Ga-AGUCG----UGGu-UC-GCGCC- -5'
10874 5' -56.2 NC_002794.1 + 48918 0.67 0.87291
Target:  5'- -cCGC-UCCgcagcgcCAGCGCCAGGCGCu- -3'
miRNA:   3'- uuGCGcAGGaa-----GUCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 49030 0.68 0.850384
Target:  5'- cGGCGuCGUCCggcgcggucgUCAGCGuCCAGgGCGCGc -3'
miRNA:   3'- -UUGC-GCAGGa---------AGUCGU-GGUU-CGCGCc -5'
10874 5' -56.2 NC_002794.1 + 50033 0.67 0.906197
Target:  5'- cAGCGCGUCC-UC-GCGCUu-GCgGCGGc -3'
miRNA:   3'- -UUGCGCAGGaAGuCGUGGuuCG-CGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.