miRNA display CGI


Results 21 - 40 of 114 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 50780 0.7 0.744935
Target:  5'- cGGCGCGUCUcgggCGGCGCCuccucgcccGGCGuCGGg -3'
miRNA:   3'- -UUGCGCAGGaa--GUCGUGGu--------UCGC-GCC- -5'
10874 5' -56.2 NC_002794.1 + 54156 0.68 0.834392
Target:  5'- -cCGCGUCCccacCAGCGCgCAGGUGUGc -3'
miRNA:   3'- uuGCGCAGGaa--GUCGUG-GUUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 54828 0.66 0.933299
Target:  5'- -gUGCGUCaugUUCGGCGgcacCCAacgcccguaggccGGCGCGGg -3'
miRNA:   3'- uuGCGCAGg--AAGUCGU----GGU-------------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 55787 0.74 0.516328
Target:  5'- --gGCGUuggCCUccagcgagcgCAGCGCCGGGCGCGGg -3'
miRNA:   3'- uugCGCA---GGAa---------GUCGUGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 57330 0.68 0.842481
Target:  5'- cAGCGCGUCCUgcugCAGCugCucGaCGCc- -3'
miRNA:   3'- -UUGCGCAGGAa---GUCGugGuuC-GCGcc -5'
10874 5' -56.2 NC_002794.1 + 59995 0.69 0.782359
Target:  5'- uGCGCcaGUUCacCGGCGCCGAGCGCa- -3'
miRNA:   3'- uUGCG--CAGGaaGUCGUGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 61874 0.77 0.381057
Target:  5'- cGCGCG-CCgucgUCGGCGCCGcgcggcgAGCGCGGc -3'
miRNA:   3'- uUGCGCaGGa---AGUCGUGGU-------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 65158 0.66 0.938615
Target:  5'- -uCGcCGUCCcgUCcguGGCGCCGAGaccgGCGGg -3'
miRNA:   3'- uuGC-GCAGGa-AG---UCGUGGUUCg---CGCC- -5'
10874 5' -56.2 NC_002794.1 + 65296 0.71 0.70597
Target:  5'- cGGCGuCGUCCUcgagacgaCAGCACCAacuccgccuGGCGCGa -3'
miRNA:   3'- -UUGC-GCAGGAa-------GUCGUGGU---------UCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 65806 0.69 0.791409
Target:  5'- uGACGaCGUCCguuucgaUCAGCGCCGAGCu--- -3'
miRNA:   3'- -UUGC-GCAGGa------AGUCGUGGUUCGcgcc -5'
10874 5' -56.2 NC_002794.1 + 65968 0.67 0.906197
Target:  5'- cGGCGUcUCCUcCGGCACCAAcgucgaacuGgGCGGu -3'
miRNA:   3'- -UUGCGcAGGAaGUCGUGGUU---------CgCGCC- -5'
10874 5' -56.2 NC_002794.1 + 66832 0.71 0.715825
Target:  5'- cGGCGCGacUCCg--GGCGCCGccgucGGCGCGGc -3'
miRNA:   3'- -UUGCGC--AGGaagUCGUGGU-----UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 67203 0.67 0.880006
Target:  5'- --aGCGUCCgggcggugcgcUCGGCGCCGGGCGg-- -3'
miRNA:   3'- uugCGCAGGa----------AGUCGUGGUUCGCgcc -5'
10874 5' -56.2 NC_002794.1 + 67386 0.71 0.715825
Target:  5'- gAACGCGUCggcgccagcgUCGGCGCCA-GCGuCGGc -3'
miRNA:   3'- -UUGCGCAGga--------AGUCGUGGUuCGC-GCC- -5'
10874 5' -56.2 NC_002794.1 + 67860 0.68 0.865605
Target:  5'- cGCGCGUCaccCGGCGCCAucccgaAGCuccgaGCGGa -3'
miRNA:   3'- uUGCGCAGgaaGUCGUGGU------UCG-----CGCC- -5'
10874 5' -56.2 NC_002794.1 + 71341 0.69 0.791409
Target:  5'- cGAUGuCGUCCgccaggCGGCGCagCAGGUGCGGc -3'
miRNA:   3'- -UUGC-GCAGGaa----GUCGUG--GUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 75189 0.66 0.917933
Target:  5'- cAACGcCGUCCagCAGagACCGAGuCGCGa -3'
miRNA:   3'- -UUGC-GCAGGaaGUCg-UGGUUC-GCGCc -5'
10874 5' -56.2 NC_002794.1 + 79286 0.66 0.923453
Target:  5'- -cCGCGUCUUUUccuGCgugGCCGAGCGCc- -3'
miRNA:   3'- uuGCGCAGGAAGu--CG---UGGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 80409 0.67 0.899986
Target:  5'- -cCGCGgCCcaggUGGCGCCGGGCGgGGc -3'
miRNA:   3'- uuGCGCaGGaa--GUCGUGGUUCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 82628 0.66 0.917933
Target:  5'- uGCGCGaacucaUCCgcCGGCGCCAgaAGCGCc- -3'
miRNA:   3'- uUGCGC------AGGaaGUCGUGGU--UCGCGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.