miRNA display CGI


Results 1 - 20 of 114 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10874 5' -56.2 NC_002794.1 + 195241 0.66 0.923453
Target:  5'- --gGCGUCac-CAGCACCGaccaccccGGCGgGGa -3'
miRNA:   3'- uugCGCAGgaaGUCGUGGU--------UCGCgCC- -5'
10874 5' -56.2 NC_002794.1 + 193157 0.68 0.850384
Target:  5'- cAGCGCcUCCagCAGCACCAGcccGCGCc- -3'
miRNA:   3'- -UUGCGcAGGaaGUCGUGGUU---CGCGcc -5'
10874 5' -56.2 NC_002794.1 + 192791 0.69 0.826124
Target:  5'- gAACGCGUCCaUCAGgAUCAcGUGCu- -3'
miRNA:   3'- -UUGCGCAGGaAGUCgUGGUuCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 192348 0.69 0.815119
Target:  5'- -uCGCGgaCCU-CGGCcuccgccgccgccgACCGAGCGCGGg -3'
miRNA:   3'- uuGCGCa-GGAaGUCG--------------UGGUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 191492 0.68 0.840074
Target:  5'- gGGCGauCGUCCgccaccgagaggugcCAGCGCCGGGCGuCGGc -3'
miRNA:   3'- -UUGC--GCAGGaa-------------GUCGUGGUUCGC-GCC- -5'
10874 5' -56.2 NC_002794.1 + 190413 0.66 0.922911
Target:  5'- cGGCGCcccaccaGUCCacCAGCAgCAGGUGCGa -3'
miRNA:   3'- -UUGCG-------CAGGaaGUCGUgGUUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 187939 0.7 0.744935
Target:  5'- -uCGCGUCacgCGugcGCGCgCGAGCGCGGg -3'
miRNA:   3'- uuGCGCAGgaaGU---CGUG-GUUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 186836 0.66 0.933794
Target:  5'- gAAgGCGcCCgaCAGCGCgCGGGCGCu- -3'
miRNA:   3'- -UUgCGCaGGaaGUCGUG-GUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 185751 0.7 0.773179
Target:  5'- cACGCGUCC---AGcCGCCG-GCGCGGc -3'
miRNA:   3'- uUGCGCAGGaagUC-GUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 185405 0.69 0.778703
Target:  5'- gGGCGCGggcccgaccgCCgucgacucgacgCGGCGCCAuGCGCGGa -3'
miRNA:   3'- -UUGCGCa---------GGaa----------GUCGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 185160 0.78 0.327606
Target:  5'- cGACGCGUCCUccgcCGGCGC--GGCGCGGu -3'
miRNA:   3'- -UUGCGCAGGAa---GUCGUGguUCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 184828 0.67 0.886886
Target:  5'- cACGCGUCCgggcGCACCGcGCaGCGa -3'
miRNA:   3'- uUGCGCAGGaaguCGUGGUuCG-CGCc -5'
10874 5' -56.2 NC_002794.1 + 184569 0.67 0.893547
Target:  5'- cACGCGccgCCgcggCGGCggcgGCCAcGCGCGGc -3'
miRNA:   3'- uUGCGCa--GGaa--GUCG----UGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 183212 0.68 0.834392
Target:  5'- cGGCGCGUUCgucgcCAGCgACCAGGCgacccgacacGCGGc -3'
miRNA:   3'- -UUGCGCAGGaa---GUCG-UGGUUCG----------CGCC- -5'
10874 5' -56.2 NC_002794.1 + 182512 0.66 0.91218
Target:  5'- uACGCGUagcggAGCACCGuccaccAGCGCGGc -3'
miRNA:   3'- uUGCGCAggaagUCGUGGU------UCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 153401 0.67 0.899986
Target:  5'- -uCGCGagCUgucgCgAGCGCCGcGCGCGGa -3'
miRNA:   3'- uuGCGCagGAa---G-UCGUGGUuCGCGCC- -5'
10874 5' -56.2 NC_002794.1 + 151188 0.7 0.773179
Target:  5'- cGCGCGUCUUUCAGUGUCu-GCGCGc -3'
miRNA:   3'- uUGCGCAGGAAGUCGUGGuuCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 150376 0.67 0.899986
Target:  5'- -cCGCGUCUUUCuacGCucCCGGGCGCc- -3'
miRNA:   3'- uuGCGCAGGAAGu--CGu-GGUUCGCGcc -5'
10874 5' -56.2 NC_002794.1 + 147948 0.66 0.933794
Target:  5'- uACGCGUaCUcUCcgGGCuCCGAGCGCGu -3'
miRNA:   3'- uUGCGCA-GGaAG--UCGuGGUUCGCGCc -5'
10874 5' -56.2 NC_002794.1 + 146880 0.68 0.851164
Target:  5'- gGGCGCGgucggCCgaugauuauaaaaGGCGCuCGGGCGCGGg -3'
miRNA:   3'- -UUGCGCa----GGaag----------UCGUG-GUUCGCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.