miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10875 3' -56.4 NC_002794.1 + 120975 0.66 0.950833
Target:  5'- cCCGGCCUGCgaguucguguagcggCGGCGGgccauggCcGAGGGUCGg -3'
miRNA:   3'- -GGCUGGGUG---------------GCCGCCa------GuCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 110697 0.66 0.949219
Target:  5'- cCCGAguagaugaCCAgCGGCacguaaccgaGGUCGGggGGUCu -3'
miRNA:   3'- -GGCUg-------GGUgGCCG----------CCAGUCuuCUAGu -5'
10875 3' -56.4 NC_002794.1 + 86910 0.66 0.949219
Target:  5'- gCCGACCCggugacGCCcguGGCGGgcaggCGGGgcgGGAUCc -3'
miRNA:   3'- -GGCUGGG------UGG---CCGCCa----GUCU---UCUAGu -5'
10875 3' -56.4 NC_002794.1 + 50629 0.66 0.949219
Target:  5'- gCUuGCCCGuCCGGCGGUCGcGAAuGAg-- -3'
miRNA:   3'- -GGcUGGGU-GGCCGCCAGU-CUU-CUagu -5'
10875 3' -56.4 NC_002794.1 + 133380 0.66 0.949219
Target:  5'- gUCG-UCguCCGGCGGUCAugaucggcccGggGGUCGa -3'
miRNA:   3'- -GGCuGGguGGCCGCCAGU----------CuuCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 94003 0.66 0.949219
Target:  5'- gCCGGCgCCGgCGGCGGgcCGGcGGGUUc -3'
miRNA:   3'- -GGCUG-GGUgGCCGCCa-GUCuUCUAGu -5'
10875 3' -56.4 NC_002794.1 + 43889 0.66 0.94881
Target:  5'- cCCGGCCguCGCCGGCGucucGUgAGGAGcggcgcgGUCAg -3'
miRNA:   3'- -GGCUGG--GUGGCCGC----CAgUCUUC-------UAGU- -5'
10875 3' -56.4 NC_002794.1 + 148983 0.66 0.946732
Target:  5'- gCCGACCU-CUGGgugcuCGGUCGGAucgacuguuucaaccGGGUCAu -3'
miRNA:   3'- -GGCUGGGuGGCC-----GCCAGUCU---------------UCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 89911 0.66 0.945031
Target:  5'- aUCGGCCCGuuGGCGc-UAGAGGcgCGg -3'
miRNA:   3'- -GGCUGGGUggCCGCcaGUCUUCuaGU- -5'
10875 3' -56.4 NC_002794.1 + 21609 0.66 0.945031
Target:  5'- gUGACCCACCGcGCcGUCgccgGGAGGAc-- -3'
miRNA:   3'- gGCUGGGUGGC-CGcCAG----UCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 145204 0.66 0.943732
Target:  5'- gCGGCCCuCCGGCagcgcuccuucgugGuGUCGGAGGcgCGc -3'
miRNA:   3'- gGCUGGGuGGCCG--------------C-CAGUCUUCuaGU- -5'
10875 3' -56.4 NC_002794.1 + 183277 0.66 0.940623
Target:  5'- gCCaGCCCACCGcGCGGaUCGGGcccGGcGUCu -3'
miRNA:   3'- -GGcUGGGUGGC-CGCC-AGUCU---UC-UAGu -5'
10875 3' -56.4 NC_002794.1 + 37738 0.66 0.940623
Target:  5'- gCGGCgCCGCCGGCGGcggcgCGGcGGcgCc -3'
miRNA:   3'- gGCUG-GGUGGCCGCCa----GUCuUCuaGu -5'
10875 3' -56.4 NC_002794.1 + 61522 0.66 0.940623
Target:  5'- aCGGCggCCGCCGGCGGcCGccgcGAAGAc-- -3'
miRNA:   3'- gGCUG--GGUGGCCGCCaGU----CUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 157995 0.66 0.940623
Target:  5'- uUGACCggaGCCGGUGGggUGGcGGAUCAg -3'
miRNA:   3'- gGCUGGg--UGGCCGCCa-GUCuUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 65909 0.66 0.935992
Target:  5'- aCGACCUugaccgucgucGCCGGCGG-CGGuGGcGUCGg -3'
miRNA:   3'- gGCUGGG-----------UGGCCGCCaGUCuUC-UAGU- -5'
10875 3' -56.4 NC_002794.1 + 104767 0.66 0.935992
Target:  5'- gUCGGCCCGCCGGCGcuccgacacgccGaCAGgcGGUg- -3'
miRNA:   3'- -GGCUGGGUGGCCGC------------CaGUCuuCUAgu -5'
10875 3' -56.4 NC_002794.1 + 67951 0.66 0.935992
Target:  5'- cUCGACCgAggaCGGCGGgccCAGAcGGGUCGg -3'
miRNA:   3'- -GGCUGGgUg--GCCGCCa--GUCU-UCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 135354 0.66 0.935992
Target:  5'- -aGAgUCAgaucCCGGUGGUgAGggGGUCGg -3'
miRNA:   3'- ggCUgGGU----GGCCGCCAgUCuuCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 114209 0.66 0.931139
Target:  5'- gCCGGCgUCuCCGGCGGcagcCAGccGAUCAg -3'
miRNA:   3'- -GGCUG-GGuGGCCGCCa---GUCuuCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.