miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10875 3' -56.4 NC_002794.1 + 30143 1.1 0.003253
Target:  5'- cCCGACCCACCGGCGGUCAGAAGAUCAg -3'
miRNA:   3'- -GGCUGGGUGGCCGCCAGUCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 798 0.77 0.395408
Target:  5'- aCCGugCCGuCCgGGCGGUCGGGAGGg-- -3'
miRNA:   3'- -GGCugGGU-GG-CCGCCAGUCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 71172 0.74 0.548712
Target:  5'- aCCaGcACCCcCCGGCGGaaCAGGAGAUCGa -3'
miRNA:   3'- -GG-C-UGGGuGGCCGCCa-GUCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 34073 0.73 0.617431
Target:  5'- gCCGuuCCCGCCGGCGGcCGGGcAGccGUCGg -3'
miRNA:   3'- -GGCu-GGGUGGCCGCCaGUCU-UC--UAGU- -5'
10875 3' -56.4 NC_002794.1 + 141951 0.73 0.637256
Target:  5'- gCGACCCGuuGGaCGGcCGGGAuGAUCGa -3'
miRNA:   3'- gGCUGGGUggCC-GCCaGUCUU-CUAGU- -5'
10875 3' -56.4 NC_002794.1 + 96201 0.72 0.666947
Target:  5'- gCCGAgucCCUGCCGGCgcugGGUCAGGAGuUCu -3'
miRNA:   3'- -GGCU---GGGUGGCCG----CCAGUCUUCuAGu -5'
10875 3' -56.4 NC_002794.1 + 29202 0.72 0.676802
Target:  5'- uCCGuCCguCCGGCGGUCGGcGGccGUCGg -3'
miRNA:   3'- -GGCuGGguGGCCGCCAGUCuUC--UAGU- -5'
10875 3' -56.4 NC_002794.1 + 131676 0.72 0.686621
Target:  5'- gCCGACUCAgCGGCGGUCuu-AGAa-- -3'
miRNA:   3'- -GGCUGGGUgGCCGCCAGucuUCUagu -5'
10875 3' -56.4 NC_002794.1 + 115721 0.72 0.695423
Target:  5'- -gGAgCCACUgGGCGGUCGGGgggcccuGGAUCAg -3'
miRNA:   3'- ggCUgGGUGG-CCGCCAGUCU-------UCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 84612 0.71 0.715794
Target:  5'- cCCGACCCccaGCCGGC-GUCAGAcuccucGGAgacgCAa -3'
miRNA:   3'- -GGCUGGG---UGGCCGcCAGUCU------UCUa---GU- -5'
10875 3' -56.4 NC_002794.1 + 138748 0.71 0.722523
Target:  5'- cCCGGCCCuCCgggggccgagucgcGGCGGUCGGuggaggggaGGGGUCAc -3'
miRNA:   3'- -GGCUGGGuGG--------------CCGCCAGUC---------UUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 93817 0.71 0.734922
Target:  5'- cUCGACCCcgaGCUGGCGGcCAucgccGAGAUCAu -3'
miRNA:   3'- -GGCUGGG---UGGCCGCCaGUc----UUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 143272 0.71 0.743424
Target:  5'- cCCGGCCCggcGCCGGCcgcucggGGUCGGgcGGgugCAg -3'
miRNA:   3'- -GGCUGGG---UGGCCG-------CCAGUCuuCUa--GU- -5'
10875 3' -56.4 NC_002794.1 + 19541 0.71 0.753714
Target:  5'- gCGGCCCGCCGGU-GUCGGAcccGGAc-- -3'
miRNA:   3'- gGCUGGGUGGCCGcCAGUCU---UCUagu -5'
10875 3' -56.4 NC_002794.1 + 182030 0.71 0.753714
Target:  5'- uCCGGgCCGCCGGCGacCAGAccAGGUCc -3'
miRNA:   3'- -GGCUgGGUGGCCGCcaGUCU--UCUAGu -5'
10875 3' -56.4 NC_002794.1 + 38628 0.7 0.762963
Target:  5'- cCCGACUCGCCGGUGcGgcgcgaCGGAGGcUCGa -3'
miRNA:   3'- -GGCUGGGUGGCCGC-Ca-----GUCUUCuAGU- -5'
10875 3' -56.4 NC_002794.1 + 180916 0.7 0.772104
Target:  5'- gCGGuCUCGCCGGCGccGUCGG-AGGUCGg -3'
miRNA:   3'- gGCU-GGGUGGCCGC--CAGUCuUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 140310 0.7 0.772104
Target:  5'- -aGGCCUGCCGGCGG-CuGGAGAa-- -3'
miRNA:   3'- ggCUGGGUGGCCGCCaGuCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 115122 0.7 0.781127
Target:  5'- aCGACCCucguCUGGguCGGUCGGGuggAGGUCGg -3'
miRNA:   3'- gGCUGGGu---GGCC--GCCAGUCU---UCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 140029 0.7 0.790025
Target:  5'- gCGGCCCccGCgGGCGG-CGGGAGA-CAc -3'
miRNA:   3'- gGCUGGG--UGgCCGCCaGUCUUCUaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.