miRNA display CGI


Results 21 - 40 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10875 3' -56.4 NC_002794.1 + 76330 0.66 0.931139
Target:  5'- gUCGuccuCCCucCCGGCGGcCGGGAG-UCGc -3'
miRNA:   3'- -GGCu---GGGu-GGCCGCCaGUCUUCuAGU- -5'
10875 3' -56.4 NC_002794.1 + 114209 0.66 0.931139
Target:  5'- gCCGGCgUCuCCGGCGGcagcCAGccGAUCAg -3'
miRNA:   3'- -GGCUG-GGuGGCCGCCa---GUCuuCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 92958 0.66 0.931139
Target:  5'- aCCGGCCCAucCCGcGCGG-CGGcAAGGg-- -3'
miRNA:   3'- -GGCUGGGU--GGC-CGCCaGUC-UUCUagu -5'
10875 3' -56.4 NC_002794.1 + 185158 0.66 0.930141
Target:  5'- gCCGACgcguccuCCGCCGGCgcggcgcGGUCGGcgcGGUCGg -3'
miRNA:   3'- -GGCUG-------GGUGGCCG-------CCAGUCuu-CUAGU- -5'
10875 3' -56.4 NC_002794.1 + 112341 0.67 0.926061
Target:  5'- gCCGGCCggcggCGCCGGCGG-CGGGgcggGGAg-- -3'
miRNA:   3'- -GGCUGG-----GUGGCCGCCaGUCU----UCUagu -5'
10875 3' -56.4 NC_002794.1 + 111037 0.67 0.926061
Target:  5'- gUGAUCCgGCUGGCGGUgCAGcucGGUCAc -3'
miRNA:   3'- gGCUGGG-UGGCCGCCA-GUCuu-CUAGU- -5'
10875 3' -56.4 NC_002794.1 + 181351 0.67 0.926061
Target:  5'- -aGACCCuccaauCCGGCccGGUU-GAGGGUCAc -3'
miRNA:   3'- ggCUGGGu-----GGCCG--CCAGuCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 156419 0.67 0.926061
Target:  5'- gCGGCCacgGCCGGCGgGUgAGAGaccGGUCGc -3'
miRNA:   3'- gGCUGGg--UGGCCGC-CAgUCUU---CUAGU- -5'
10875 3' -56.4 NC_002794.1 + 95884 0.67 0.922906
Target:  5'- gCGACCCGgCGGCgagggcgcacgacguGGUgCGGGAGGUgCAc -3'
miRNA:   3'- gGCUGGGUgGCCG---------------CCA-GUCUUCUA-GU- -5'
10875 3' -56.4 NC_002794.1 + 17434 0.67 0.920758
Target:  5'- uCCG-CgCCGCCGGCGcUCGGGcccgcgaccgAGGUCGa -3'
miRNA:   3'- -GGCuG-GGUGGCCGCcAGUCU----------UCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 141646 0.67 0.920758
Target:  5'- gCCGGCguggccgcggCCGCCGGCGgGUCGagcGAAGAc-- -3'
miRNA:   3'- -GGCUG----------GGUGGCCGC-CAGU---CUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 39700 0.67 0.91747
Target:  5'- cCCGGCaCCGCCGGCGcuaccgaccgCugcagcaucacgacgAGGAGAUCAa -3'
miRNA:   3'- -GGCUG-GGUGGCCGCca--------G---------------UCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 189546 0.67 0.909483
Target:  5'- gUCGAUCCACCacauGGCGGUCccgcucGGUCGg -3'
miRNA:   3'- -GGCUGGGUGG----CCGCCAGucuu--CUAGU- -5'
10875 3' -56.4 NC_002794.1 + 79219 0.67 0.909483
Target:  5'- aCCGACCCucCCGGaCGGUC-GAcuucuaccugcAGAcUCAg -3'
miRNA:   3'- -GGCUGGGu-GGCC-GCCAGuCU-----------UCU-AGU- -5'
10875 3' -56.4 NC_002794.1 + 185128 0.67 0.909483
Target:  5'- aCGACCaGgCGGCGccgcGUCgAGAAGAUCGc -3'
miRNA:   3'- gGCUGGgUgGCCGC----CAG-UCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 141832 0.67 0.908896
Target:  5'- aCGACgagcggaUCGCuCGGCGGUUGGAAGAg-- -3'
miRNA:   3'- gGCUG-------GGUG-GCCGCCAGUCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 61153 0.67 0.903512
Target:  5'- cCCGACCCcgAgCGcGCGGUCc--GGAUCGg -3'
miRNA:   3'- -GGCUGGG--UgGC-CGCCAGucuUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 134565 0.67 0.903512
Target:  5'- uCCu-CCCGCCGGCG--CAGAAGGUg- -3'
miRNA:   3'- -GGcuGGGUGGCCGCcaGUCUUCUAgu -5'
10875 3' -56.4 NC_002794.1 + 66728 0.67 0.903512
Target:  5'- gCCGcCaCCGCCGGCGGUggCGGcGGcgCGu -3'
miRNA:   3'- -GGCuG-GGUGGCCGCCA--GUCuUCuaGU- -5'
10875 3' -56.4 NC_002794.1 + 65160 0.67 0.899825
Target:  5'- gCCGuCCCguccguggcgccgagACCGGCGGgugcCGGcGAGGUCGg -3'
miRNA:   3'- -GGCuGGG---------------UGGCCGCCa---GUC-UUCUAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.