miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10875 3' -56.4 NC_002794.1 + 555 0.68 0.890916
Target:  5'- cCCGGCCUcgGCgCGGCGGU-GGcAGGUCu -3'
miRNA:   3'- -GGCUGGG--UG-GCCGCCAgUCuUCUAGu -5'
10875 3' -56.4 NC_002794.1 + 798 0.77 0.395408
Target:  5'- aCCGugCCGuCCgGGCGGUCGGGAGGg-- -3'
miRNA:   3'- -GGCugGGU-GG-CCGCCAGUCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 2338 0.69 0.848144
Target:  5'- gCCGGCCCACCGGUccGGaCAGGcucUCGc -3'
miRNA:   3'- -GGCUGGGUGGCCG--CCaGUCUucuAGU- -5'
10875 3' -56.4 NC_002794.1 + 17434 0.67 0.920758
Target:  5'- uCCG-CgCCGCCGGCGcUCGGGcccgcgaccgAGGUCGa -3'
miRNA:   3'- -GGCuG-GGUGGCCGCcAGUCU----------UCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 18823 0.66 0.931139
Target:  5'- gCGACCUcgGCCGGCG--CGGAGGAg-- -3'
miRNA:   3'- gGCUGGG--UGGCCGCcaGUCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 19541 0.71 0.753714
Target:  5'- gCGGCCCGCCGGU-GUCGGAcccGGAc-- -3'
miRNA:   3'- gGCUGGGUGGCCGcCAGUCU---UCUagu -5'
10875 3' -56.4 NC_002794.1 + 21609 0.66 0.945031
Target:  5'- gUGACCCACCGcGCcGUCgccgGGAGGAc-- -3'
miRNA:   3'- gGCUGGGUGGC-CGcCAG----UCUUCUagu -5'
10875 3' -56.4 NC_002794.1 + 29202 0.72 0.676802
Target:  5'- uCCGuCCguCCGGCGGUCGGcGGccGUCGg -3'
miRNA:   3'- -GGCuGGguGGCCGCCAGUCuUC--UAGU- -5'
10875 3' -56.4 NC_002794.1 + 30143 1.1 0.003253
Target:  5'- cCCGACCCACCGGCGGUCAGAAGAUCAg -3'
miRNA:   3'- -GGCUGGGUGGCCGCCAGUCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 34073 0.73 0.617431
Target:  5'- gCCGuuCCCGCCGGCGGcCGGGcAGccGUCGg -3'
miRNA:   3'- -GGCu-GGGUGGCCGCCaGUCU-UC--UAGU- -5'
10875 3' -56.4 NC_002794.1 + 34711 0.67 0.897323
Target:  5'- -aGGCCCGCCGGCGc-CAcGAGGcgCGg -3'
miRNA:   3'- ggCUGGGUGGCCGCcaGU-CUUCuaGU- -5'
10875 3' -56.4 NC_002794.1 + 37738 0.66 0.940623
Target:  5'- gCGGCgCCGCCGGCGGcggcgCGGcGGcgCc -3'
miRNA:   3'- gGCUG-GGUGGCCGCCa----GUCuUCuaGu -5'
10875 3' -56.4 NC_002794.1 + 38628 0.7 0.762963
Target:  5'- cCCGACUCGCCGGUGcGgcgcgaCGGAGGcUCGa -3'
miRNA:   3'- -GGCUGGGUGGCCGC-Ca-----GUCUUCuAGU- -5'
10875 3' -56.4 NC_002794.1 + 39700 0.67 0.91747
Target:  5'- cCCGGCaCCGCCGGCGcuaccgaccgCugcagcaucacgacgAGGAGAUCAa -3'
miRNA:   3'- -GGCUG-GGUGGCCGCca--------G---------------UCUUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 43889 0.66 0.94881
Target:  5'- cCCGGCCguCGCCGGCGucucGUgAGGAGcggcgcgGUCAg -3'
miRNA:   3'- -GGCUGG--GUGGCCGC----CAgUCUUC-------UAGU- -5'
10875 3' -56.4 NC_002794.1 + 50629 0.66 0.949219
Target:  5'- gCUuGCCCGuCCGGCGGUCGcGAAuGAg-- -3'
miRNA:   3'- -GGcUGGGU-GGCCGCCAGU-CUU-CUagu -5'
10875 3' -56.4 NC_002794.1 + 53288 0.68 0.863196
Target:  5'- gCGACCacuccagguGCCGaGCGGUCGGccggcgccgcGAGAUCGg -3'
miRNA:   3'- gGCUGGg--------UGGC-CGCCAGUC----------UUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 54047 0.69 0.832357
Target:  5'- gCGACCCgucgACgUGGCGG-CAGAuGGUCAg -3'
miRNA:   3'- gGCUGGG----UG-GCCGCCaGUCUuCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 61153 0.67 0.903512
Target:  5'- cCCGACCCcgAgCGcGCGGUCc--GGAUCGg -3'
miRNA:   3'- -GGCUGGG--UgGC-CGCCAGucuUCUAGU- -5'
10875 3' -56.4 NC_002794.1 + 61522 0.66 0.940623
Target:  5'- aCGGCggCCGCCGGCGGcCGccgcGAAGAc-- -3'
miRNA:   3'- gGCUG--GGUGGCCGCCaGU----CUUCUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.