miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10875 5' -56.1 NC_002794.1 + 100798 0.66 0.925259
Target:  5'- cGCGGccgCUUCuGCGCCUacgugccgGGCGGcgGg -3'
miRNA:   3'- aUGCCaa-GAAGuCGCGGG--------CCGUCuaC- -5'
10875 5' -56.1 NC_002794.1 + 189135 0.66 0.925259
Target:  5'- gUGCGGggCcgcCAGCGCCagacucucccgCGGCAGGUc -3'
miRNA:   3'- -AUGCCaaGaa-GUCGCGG-----------GCCGUCUAc -5'
10875 5' -56.1 NC_002794.1 + 190756 0.66 0.91406
Target:  5'- gACGGggg--CGGCGgccgcgcguCCCGGUAGAUGa -3'
miRNA:   3'- aUGCCaagaaGUCGC---------GGGCCGUCUAC- -5'
10875 5' -56.1 NC_002794.1 + 110493 0.66 0.91406
Target:  5'- gGCGGUgg--CGGCGCCUGG-AGAa- -3'
miRNA:   3'- aUGCCAagaaGUCGCGGGCCgUCUac -5'
10875 5' -56.1 NC_002794.1 + 66565 0.67 0.901923
Target:  5'- aUACGGUaUCgcCGGCGCCggCGGCAGc-- -3'
miRNA:   3'- -AUGCCA-AGaaGUCGCGG--GCCGUCuac -5'
10875 5' -56.1 NC_002794.1 + 184166 0.67 0.892878
Target:  5'- gACGGcgUCUccacccgacaccgCGGCGCCCGGCgAGGc- -3'
miRNA:   3'- aUGCCa-AGAa------------GUCGCGGGCCG-UCUac -5'
10875 5' -56.1 NC_002794.1 + 115829 0.67 0.882
Target:  5'- -cUGGaUCggCGGgGCCCGGCGGGc- -3'
miRNA:   3'- auGCCaAGaaGUCgCGGGCCGUCUac -5'
10875 5' -56.1 NC_002794.1 + 112306 0.67 0.874914
Target:  5'- -cCGGguccgaCUUCGGCGCCgaCGGCGGGg- -3'
miRNA:   3'- auGCCaa----GAAGUCGCGG--GCCGUCUac -5'
10875 5' -56.1 NC_002794.1 + 90517 0.67 0.874914
Target:  5'- cGCGcg-CUUCGGCGCUCGucuccGCGGGUGa -3'
miRNA:   3'- aUGCcaaGAAGUCGCGGGC-----CGUCUAC- -5'
10875 5' -56.1 NC_002794.1 + 152567 0.67 0.874914
Target:  5'- aGCGGcgCUUCAcCGCCgCGGCGGc-- -3'
miRNA:   3'- aUGCCaaGAAGUcGCGG-GCCGUCuac -5'
10875 5' -56.1 NC_002794.1 + 37752 0.67 0.867614
Target:  5'- gGCGGcgCggCGGCGCC-GGCGGGa- -3'
miRNA:   3'- aUGCCaaGaaGUCGCGGgCCGUCUac -5'
10875 5' -56.1 NC_002794.1 + 130683 0.68 0.852391
Target:  5'- cGCGGccUCgugggaGGCGCCguguCGGCAGAUGa -3'
miRNA:   3'- aUGCCa-AGaag---UCGCGG----GCCGUCUAC- -5'
10875 5' -56.1 NC_002794.1 + 87080 0.68 0.836379
Target:  5'- cACGGUg---CAG-GCCgGGCGGGUGg -3'
miRNA:   3'- aUGCCAagaaGUCgCGGgCCGUCUAC- -5'
10875 5' -56.1 NC_002794.1 + 124152 0.68 0.828094
Target:  5'- aGCGGUcUCcgCGGgGCCCGGgAGAg- -3'
miRNA:   3'- aUGCCA-AGaaGUCgCGGGCCgUCUac -5'
10875 5' -56.1 NC_002794.1 + 94802 0.69 0.802213
Target:  5'- cACGGggauggCAGCGCuacuaCCGGCGGGUGc -3'
miRNA:   3'- aUGCCaagaa-GUCGCG-----GGCCGUCUAC- -5'
10875 5' -56.1 NC_002794.1 + 142407 0.69 0.793271
Target:  5'- gGCGGcgUCggCGGCGCCgGGCGcGAUu -3'
miRNA:   3'- aUGCCa-AGaaGUCGCGGgCCGU-CUAc -5'
10875 5' -56.1 NC_002794.1 + 53774 0.69 0.793271
Target:  5'- gGCGGgaCgcccgCGacGCGCCCGGCGGGUu -3'
miRNA:   3'- aUGCCaaGaa---GU--CGCGGGCCGUCUAc -5'
10875 5' -56.1 NC_002794.1 + 101203 0.7 0.765616
Target:  5'- -cUGGaggaggCGGcCGCCCGGCAGAUGg -3'
miRNA:   3'- auGCCaagaa-GUC-GCGGGCCGUCUAC- -5'
10875 5' -56.1 NC_002794.1 + 113599 0.7 0.765616
Target:  5'- cGCGGaguUUCUcCAGCGCCgCGGcCAGGUu -3'
miRNA:   3'- aUGCC---AAGAaGUCGCGG-GCC-GUCUAc -5'
10875 5' -56.1 NC_002794.1 + 180684 0.7 0.756152
Target:  5'- -cCGGccgCUccCGGCGCCCGGCGGGc- -3'
miRNA:   3'- auGCCaa-GAa-GUCGCGGGCCGUCUac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.