miRNA display CGI


Results 1 - 20 of 71 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10876 3' -53.6 NC_002794.1 + 138770 0.66 0.985598
Target:  5'- --cGCGG-CGGucGGugGAgGGGAGGg -3'
miRNA:   3'- gauCGUCuGCCucCCuuUUgCCCUCC- -5'
10876 3' -53.6 NC_002794.1 + 145326 0.66 0.985598
Target:  5'- -cGGCGGGCGGcgcucGGGcccGAGCGGGcccgagcuGGGg -3'
miRNA:   3'- gaUCGUCUGCCu----CCCu--UUUGCCC--------UCC- -5'
10876 3' -53.6 NC_002794.1 + 88183 0.66 0.985598
Target:  5'- -aAGCAGAaaaGGGGGGcugcguuACGGGcagcGGGc -3'
miRNA:   3'- gaUCGUCUg--CCUCCCuuu----UGCCC----UCC- -5'
10876 3' -53.6 NC_002794.1 + 149692 0.66 0.985598
Target:  5'- aCUGGCc-GCGGGGGccgccuGGCGGGuGGg -3'
miRNA:   3'- -GAUCGucUGCCUCCcuu---UUGCCCuCC- -5'
10876 3' -53.6 NC_002794.1 + 109926 0.66 0.985259
Target:  5'- uCUAGCucucccaguucuGGgGGucAGGGAGGGcCGGGGGGu -3'
miRNA:   3'- -GAUCGu-----------CUgCC--UCCCUUUU-GCCCUCC- -5'
10876 3' -53.6 NC_002794.1 + 177527 0.66 0.983838
Target:  5'- -gAGguGACaaGGAGGGguGGCGcGGAacGGa -3'
miRNA:   3'- gaUCguCUG--CCUCCCuuUUGC-CCU--CC- -5'
10876 3' -53.6 NC_002794.1 + 153009 0.66 0.983838
Target:  5'- -cAGCAcGGCGGAcuGGGc-GACGGGgacGGGa -3'
miRNA:   3'- gaUCGU-CUGCCU--CCCuuUUGCCC---UCC- -5'
10876 3' -53.6 NC_002794.1 + 140129 0.66 0.98192
Target:  5'- -cGGUGGGCGGGuGGGGAacGACGaGGcGGu -3'
miRNA:   3'- gaUCGUCUGCCU-CCCUU--UUGC-CCuCC- -5'
10876 3' -53.6 NC_002794.1 + 14611 0.66 0.98192
Target:  5'- -gGGCAccgcGACGGGGccGGAGACGGGGccGGg -3'
miRNA:   3'- gaUCGU----CUGCCUCc-CUUUUGCCCU--CC- -5'
10876 3' -53.6 NC_002794.1 + 47818 0.66 0.979836
Target:  5'- -aGGCGGAC-GAGGGA---CGGGAa- -3'
miRNA:   3'- gaUCGUCUGcCUCCCUuuuGCCCUcc -5'
10876 3' -53.6 NC_002794.1 + 99348 0.66 0.979618
Target:  5'- gCUGGCGauccGuCGGuuGGAcgaagagAAGCGGGAGGu -3'
miRNA:   3'- -GAUCGU----CuGCCucCCU-------UUUGCCCUCC- -5'
10876 3' -53.6 NC_002794.1 + 9730 0.66 0.977577
Target:  5'- -aGGcCAGGCaccgGGuGGGuAGGugGGGGGGg -3'
miRNA:   3'- gaUC-GUCUG----CCuCCC-UUUugCCCUCC- -5'
10876 3' -53.6 NC_002794.1 + 139825 0.66 0.977577
Target:  5'- cCUGGacgacgaAGACcaaGAGGuuGAGCGGGAGGc -3'
miRNA:   3'- -GAUCg------UCUGc--CUCCcuUUUGCCCUCC- -5'
10876 3' -53.6 NC_002794.1 + 53796 0.67 0.975138
Target:  5'- -cGGCGGGuuucuCGGcGGGAGccucGGCGGGAGc -3'
miRNA:   3'- gaUCGUCU-----GCCuCCCUU----UUGCCCUCc -5'
10876 3' -53.6 NC_002794.1 + 95796 0.67 0.972511
Target:  5'- -aGGCGcGGCGGAggaaccGGGGGAGCGGcggcggccGGGGg -3'
miRNA:   3'- gaUCGU-CUGCCU------CCCUUUUGCC--------CUCC- -5'
10876 3' -53.6 NC_002794.1 + 149834 0.67 0.969689
Target:  5'- -aGGaCGGGCGGGGacGAGGACGGGgacgAGGa -3'
miRNA:   3'- gaUC-GUCUGCCUCc-CUUUUGCCC----UCC- -5'
10876 3' -53.6 NC_002794.1 + 70264 0.67 0.966666
Target:  5'- -cAGC-GACGGAGgccgcgaaggccGGAGAGCaggccGGGGGGg -3'
miRNA:   3'- gaUCGuCUGCCUC------------CCUUUUG-----CCCUCC- -5'
10876 3' -53.6 NC_002794.1 + 89677 0.67 0.966666
Target:  5'- -cGGCGGugGGAGGGcuguucGCGGcGAa- -3'
miRNA:   3'- gaUCGUCugCCUCCCuuu---UGCC-CUcc -5'
10876 3' -53.6 NC_002794.1 + 72410 0.67 0.963437
Target:  5'- gUAGCAcaccgccgcGGCGGAGGaGGAGcCGGcgGAGGg -3'
miRNA:   3'- gAUCGU---------CUGCCUCC-CUUUuGCC--CUCC- -5'
10876 3' -53.6 NC_002794.1 + 104496 0.67 0.963437
Target:  5'- -cGGCGGcCGGgucGGGcGAGAACGGGcugAGGc -3'
miRNA:   3'- gaUCGUCuGCC---UCC-CUUUUGCCC---UCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.