miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10878 5' -45.7 NC_002794.1 + 155070 0.66 0.999987
Target:  5'- aGGUaAGcGAGauaGAGCUCUUGGAGGg -3'
miRNA:   3'- aCCAcUCuCUCg--UUCGAGAAUUUUUa -5'
10878 5' -45.7 NC_002794.1 + 89680 0.67 0.999936
Target:  5'- cGGUGGGAGGGCu-GUUCg------- -3'
miRNA:   3'- aCCACUCUCUCGuuCGAGaauuuuua -5'
10878 5' -45.7 NC_002794.1 + 135368 0.68 0.999899
Target:  5'- gUGGUGAGGGGGUcgguuuauacucagaGAGCgUCUcGGAAAc -3'
miRNA:   3'- -ACCACUCUCUCG---------------UUCG-AGAaUUUUUa -5'
10878 5' -45.7 NC_002794.1 + 87097 0.68 0.999684
Target:  5'- gGGUGGGGGuGCAGGCcgggCgggUGGGGGUg -3'
miRNA:   3'- aCCACUCUCuCGUUCGa---Ga--AUUUUUA- -5'
10878 5' -45.7 NC_002794.1 + 87265 0.68 0.999684
Target:  5'- gGGUGGGGGuGCAGGCcgggCgggUGGGGGUg -3'
miRNA:   3'- aCCACUCUCuCGUUCGa---Ga--AUUUUUA- -5'
10878 5' -45.7 NC_002794.1 + 87223 0.68 0.999684
Target:  5'- gGGUGGGGGuGCAGGCcgggCgggUGGGGGUg -3'
miRNA:   3'- aCCACUCUCuCGUUCGa---Ga--AUUUUUA- -5'
10878 5' -45.7 NC_002794.1 + 87181 0.68 0.999684
Target:  5'- gGGUGGGGGuGCAGGCcgggCgggUGGGGGUg -3'
miRNA:   3'- aCCACUCUCuCGUUCGa---Ga--AUUUUUA- -5'
10878 5' -45.7 NC_002794.1 + 87139 0.68 0.999684
Target:  5'- gGGUGGGGGuGCAGGCcgggCgggUGGGGGUg -3'
miRNA:   3'- aCCACUCUCuCGUUCGa---Ga--AUUUUUA- -5'
10878 5' -45.7 NC_002794.1 + 10921 0.7 0.999021
Target:  5'- cUGGUG-GuGAGUAAGCUCUa------ -3'
miRNA:   3'- -ACCACuCuCUCGUUCGAGAauuuuua -5'
10878 5' -45.7 NC_002794.1 + 150062 0.72 0.993062
Target:  5'- cGGUGGGAcGAGCGcGCUCUg------ -3'
miRNA:   3'- aCCACUCU-CUCGUuCGAGAauuuuua -5'
10878 5' -45.7 NC_002794.1 + 56690 0.73 0.986076
Target:  5'- cGGUGGGGGAG-GAGCUCUUc----- -3'
miRNA:   3'- aCCACUCUCUCgUUCGAGAAuuuuua -5'
10878 5' -45.7 NC_002794.1 + 29404 1.07 0.041221
Target:  5'- gUGGUGAGAGAGCAAGCUCUUAAAAAUc -3'
miRNA:   3'- -ACCACUCUCUCGUUCGAGAAUUUUUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.