miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10879 5' -58 NC_002794.1 + 83420 0.66 0.910571
Target:  5'- cCGGAU-GCUGGcCGG-CAAGcCGGUCAc -3'
miRNA:   3'- -GCCUGcCGGCCaGCCaGUUC-GCUAGU- -5'
10879 5' -58 NC_002794.1 + 71106 0.66 0.910571
Target:  5'- cCGG-CGGCCuGGcCGGagAGGCGcUCGu -3'
miRNA:   3'- -GCCuGCCGG-CCaGCCagUUCGCuAGU- -5'
10879 5' -58 NC_002794.1 + 16221 0.66 0.910571
Target:  5'- aGGucCGGCgGGUCaGGUCGGGCuggCAc -3'
miRNA:   3'- gCCu-GCCGgCCAG-CCAGUUCGcuaGU- -5'
10879 5' -58 NC_002794.1 + 192822 0.66 0.904696
Target:  5'- uGGAacaGGCCGGUCGc-CAGGUaGUCGc -3'
miRNA:   3'- gCCUg--CCGGCCAGCcaGUUCGcUAGU- -5'
10879 5' -58 NC_002794.1 + 47828 0.66 0.904696
Target:  5'- gGGACGGgaagcagcuCCGGUCGcagCAGGCGGc-- -3'
miRNA:   3'- gCCUGCC---------GGCCAGCca-GUUCGCUagu -5'
10879 5' -58 NC_002794.1 + 186301 0.66 0.904696
Target:  5'- -aGGCGGCCGGUCGccgCGGcGCGcUCGu -3'
miRNA:   3'- gcCUGCCGGCCAGCca-GUU-CGCuAGU- -5'
10879 5' -58 NC_002794.1 + 12209 0.66 0.904696
Target:  5'- uCGGACGuGCCGG-CGG-CGucGGCGGc-- -3'
miRNA:   3'- -GCCUGC-CGGCCaGCCaGU--UCGCUagu -5'
10879 5' -58 NC_002794.1 + 143278 0.66 0.898605
Target:  5'- cCGGcgcCGGCCGcUCGGggUCGGGCGGgugCAg -3'
miRNA:   3'- -GCCu--GCCGGCcAGCC--AGUUCGCUa--GU- -5'
10879 5' -58 NC_002794.1 + 111132 0.66 0.892301
Target:  5'- cCGG-CGGCCGGUgcuccacgCGGU--AGCgGGUCAg -3'
miRNA:   3'- -GCCuGCCGGCCA--------GCCAguUCG-CUAGU- -5'
10879 5' -58 NC_002794.1 + 141653 0.66 0.892301
Target:  5'- uGGccGCGGCCGccggCgGGUCGAGCGAa-- -3'
miRNA:   3'- gCC--UGCCGGCca--G-CCAGUUCGCUagu -5'
10879 5' -58 NC_002794.1 + 116907 0.66 0.885786
Target:  5'- cCGG-CGGCCGGUCcggcGUCGgcuccGGCGucGUCGg -3'
miRNA:   3'- -GCCuGCCGGCCAGc---CAGU-----UCGC--UAGU- -5'
10879 5' -58 NC_002794.1 + 129431 0.66 0.885786
Target:  5'- aCGGGCGGagcgagucugaaCCGGagugucgugaaCGGUCcAGCGGUCGg -3'
miRNA:   3'- -GCCUGCC------------GGCCa----------GCCAGuUCGCUAGU- -5'
10879 5' -58 NC_002794.1 + 156185 0.66 0.885123
Target:  5'- uCGGACGcgucaucggagucGCCGGUCGGagggCcGGCGAc-- -3'
miRNA:   3'- -GCCUGC-------------CGGCCAGCCa---GuUCGCUagu -5'
10879 5' -58 NC_002794.1 + 40416 0.66 0.883791
Target:  5'- gGGuCGGCCGGcgacucugcagaucUCGGUaguggGAGCGAUg- -3'
miRNA:   3'- gCCuGCCGGCC--------------AGCCAg----UUCGCUAgu -5'
10879 5' -58 NC_002794.1 + 115729 0.66 0.879746
Target:  5'- uGGGCGGUCGGggggcccuggaucaGGUaCGGcGCGAUCGg -3'
miRNA:   3'- gCCUGCCGGCCag------------CCA-GUU-CGCUAGU- -5'
10879 5' -58 NC_002794.1 + 110428 0.66 0.879065
Target:  5'- cCGGGCGGCUGucgucGUCGGU--GGCGGa-- -3'
miRNA:   3'- -GCCUGCCGGC-----CAGCCAguUCGCUagu -5'
10879 5' -58 NC_002794.1 + 179108 0.66 0.879065
Target:  5'- cCGGucguccGCGGuCCGGgcgcgCGGUCGGuCGAUCGu -3'
miRNA:   3'- -GCC------UGCC-GGCCa----GCCAGUUcGCUAGU- -5'
10879 5' -58 NC_002794.1 + 51215 0.66 0.879065
Target:  5'- gCGGAgCGGCCGGcCGGcCGAugggaaaCGGUCGc -3'
miRNA:   3'- -GCCU-GCCGGCCaGCCaGUUc------GCUAGU- -5'
10879 5' -58 NC_002794.1 + 70200 0.66 0.878382
Target:  5'- uGGAgCGGagauccagcucgcCCGGaCGGUCGGGCGggCGg -3'
miRNA:   3'- gCCU-GCC-------------GGCCaGCCAGUUCGCuaGU- -5'
10879 5' -58 NC_002794.1 + 105776 0.67 0.872141
Target:  5'- uCGGugGGCCGcGUCGa-UAGGuCGGUCu -3'
miRNA:   3'- -GCCugCCGGC-CAGCcaGUUC-GCUAGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.