miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 150981 0.66 0.900981
Target:  5'- cGGCCGGuCUGGAcGACgaGCUCGcCCGc -3'
miRNA:   3'- -CUGGCU-GGCCUaCUGg-CGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 75263 0.66 0.900981
Target:  5'- aACCGAcCCGGcuccACCGCccaccCGGCCGGc -3'
miRNA:   3'- cUGGCU-GGCCuac-UGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 176609 0.66 0.900981
Target:  5'- cGGCCGGCaCGGccauccucGUGG-CGUUCGGcCCGGa -3'
miRNA:   3'- -CUGGCUG-GCC--------UACUgGCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 73574 0.66 0.900981
Target:  5'- cACCGACUGGAUcGacgccaaggcGCCGUaCGACgGGu -3'
miRNA:   3'- cUGGCUGGCCUA-C----------UGGCGaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 77003 0.66 0.900981
Target:  5'- cACCGucACCGGGauGCCGCcggcgcaccUCGACCGc -3'
miRNA:   3'- cUGGC--UGGCCUacUGGCG---------AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 180369 0.66 0.900377
Target:  5'- cGACCGgcgcgaggacgcuGCCGGccaGCUGCUCGAaCGGg -3'
miRNA:   3'- -CUGGC-------------UGGCCuacUGGCGAGCUgGCC- -5'
10880 3' -58.7 NC_002794.1 + 893 0.66 0.894845
Target:  5'- cGCgGGCCGGGUGccaacGCCGCUCc-CCGc -3'
miRNA:   3'- cUGgCUGGCCUAC-----UGGCGAGcuGGCc -5'
10880 3' -58.7 NC_002794.1 + 10963 0.66 0.894845
Target:  5'- gGGCCGGCCGagacguccGAUGcCUGCUCcgaGGCCGc -3'
miRNA:   3'- -CUGGCUGGC--------CUACuGGCGAG---CUGGCc -5'
10880 3' -58.7 NC_002794.1 + 78685 0.66 0.894845
Target:  5'- cGCCGGCCGcAUGugCGgC-CGACaCGGc -3'
miRNA:   3'- cUGGCUGGCcUACugGC-GaGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 120129 0.66 0.894845
Target:  5'- cGACggCGACCGGGgacgGGCCGgU--GCCGGa -3'
miRNA:   3'- -CUG--GCUGGCCUa---CUGGCgAgcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 166760 0.66 0.894845
Target:  5'- cGGCUGACgcguauUGGAUGGCCG-UCGACgGa -3'
miRNA:   3'- -CUGGCUG------GCCUACUGGCgAGCUGgCc -5'
10880 3' -58.7 NC_002794.1 + 127997 0.66 0.894845
Target:  5'- -uCUGGgCGGAcGACCGUcgUCGGCCGc -3'
miRNA:   3'- cuGGCUgGCCUaCUGGCG--AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 83839 0.66 0.894845
Target:  5'- cGGCCGAUCGG----UCGC-CGAUCGGg -3'
miRNA:   3'- -CUGGCUGGCCuacuGGCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 195580 0.66 0.888504
Target:  5'- cGACCGACCGccgGACCGgC-CGACgCGc -3'
miRNA:   3'- -CUGGCUGGCcuaCUGGC-GaGCUG-GCc -5'
10880 3' -58.7 NC_002794.1 + 178787 0.66 0.888504
Target:  5'- cGAagGGCgGGAaGGCgGCUCGGcCCGGg -3'
miRNA:   3'- -CUggCUGgCCUaCUGgCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 20282 0.66 0.888504
Target:  5'- cGACCGaaccGCCGGAaGACCaagcgcucugGCUCGAgaUGGa -3'
miRNA:   3'- -CUGGC----UGGCCUaCUGG----------CGAGCUg-GCC- -5'
10880 3' -58.7 NC_002794.1 + 149967 0.66 0.881959
Target:  5'- uGGCCGACCugccGcgGACCGg-CGGCCGc -3'
miRNA:   3'- -CUGGCUGGc---CuaCUGGCgaGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 137152 0.66 0.881959
Target:  5'- cGGCCGGCCGcccucGGUcccGGCCGCUCGcucGCCc- -3'
miRNA:   3'- -CUGGCUGGC-----CUA---CUGGCGAGC---UGGcc -5'
10880 3' -58.7 NC_002794.1 + 82858 0.66 0.881959
Target:  5'- aGCgCGACCGc--GACCGCgaccgCGACCGu -3'
miRNA:   3'- cUG-GCUGGCcuaCUGGCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 106983 0.66 0.881959
Target:  5'- cGGCCGGCaCGGcgGUGGCgGCgcuGGCCGa -3'
miRNA:   3'- -CUGGCUG-GCC--UACUGgCGag-CUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.