miRNA display CGI


Results 1 - 20 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 27392 1.09 0.00272
Target:  5'- cGACCGACCGGAUGACCGCUCGACCGGc -3'
miRNA:   3'- -CUGGCUGGCCUACUGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 22793 0.79 0.256406
Target:  5'- cGACCGACCGaccGACCGCUCGACUc- -3'
miRNA:   3'- -CUGGCUGGCcuaCUGGCGAGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 101567 0.79 0.268229
Target:  5'- cGCCGGCgGGAgugccGGCCGCcgCGGCCGGg -3'
miRNA:   3'- cUGGCUGgCCUa----CUGGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 12882 0.78 0.306334
Target:  5'- aGCCGauGCCGGAccacGAcCCGCUCGACUGGg -3'
miRNA:   3'- cUGGC--UGGCCUa---CU-GGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86498 0.77 0.346979
Target:  5'- gGACCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86330 0.77 0.346979
Target:  5'- gGACCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 132573 0.77 0.326889
Target:  5'- aGCCagGACCGGGUgGGCCGCUUcACCGGg -3'
miRNA:   3'- cUGG--CUGGCCUA-CUGGCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86378 0.75 0.392936
Target:  5'- gGGCCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 67194 0.75 0.418179
Target:  5'- gGACCGAaaagcguCCGGGcgGugCGCUCGgcGCCGGg -3'
miRNA:   3'- -CUGGCU-------GGCCUa-CugGCGAGC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86186 0.75 0.392936
Target:  5'- gGGCCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86546 0.75 0.392936
Target:  5'- gGGCCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 129169 0.75 0.410748
Target:  5'- --gCGGCC-GAUGGCCGUUCGAUCGGc -3'
miRNA:   3'- cugGCUGGcCUACUGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 84755 0.74 0.488505
Target:  5'- cGACCGGCCGcGAgagGGCCGUcCGAggcCCGGc -3'
miRNA:   3'- -CUGGCUGGC-CUa--CUGGCGaGCU---GGCC- -5'
10880 3' -58.7 NC_002794.1 + 124492 0.74 0.444384
Target:  5'- gGACCG-CCGGAUGGagUCGCgUCGGCCGc -3'
miRNA:   3'- -CUGGCuGGCCUACU--GGCG-AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 127089 0.74 0.453032
Target:  5'- gGACCGGCUGGAgagcGGCgGCUCG-CCGa -3'
miRNA:   3'- -CUGGCUGGCCUa---CUGgCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 99924 0.73 0.515942
Target:  5'- cGCCGugCGGcGUGgucuugcgGCUGUUCGGCCGGa -3'
miRNA:   3'- cUGGCugGCC-UAC--------UGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 90674 0.73 0.515942
Target:  5'- gGGCCGGCCGcGUGGCUGUUCGugUGc -3'
miRNA:   3'- -CUGGCUGGCcUACUGGCGAGCugGCc -5'
10880 3' -58.7 NC_002794.1 + 98353 0.73 0.525227
Target:  5'- cGACCGGCC-GAUcGCCGCgCGGCUGGc -3'
miRNA:   3'- -CUGGCUGGcCUAcUGGCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 146922 0.73 0.515942
Target:  5'- gGAUCGGCCGGAcggaGAgCGCUCGGuCUGGc -3'
miRNA:   3'- -CUGGCUGGCCUa---CUgGCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 149665 0.73 0.54398
Target:  5'- aGGCCGAgCGGG-GGCgcgucgCGCUCGACUGGc -3'
miRNA:   3'- -CUGGCUgGCCUaCUG------GCGAGCUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.