miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 48073 0.72 0.553439
Target:  5'- uGGCCGGCCagcgGGAgcagccGCCGCUCG-CCGGc -3'
miRNA:   3'- -CUGGCUGG----CCUac----UGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 10346 0.72 0.553439
Target:  5'- --gCGACCGGGUGACggacUGCUCGACggUGGa -3'
miRNA:   3'- cugGCUGGCCUACUG----GCGAGCUG--GCC- -5'
10880 3' -58.7 NC_002794.1 + 189019 0.72 0.553439
Target:  5'- cGACaGGCCaGGA--GCCGCUCGACCGc -3'
miRNA:   3'- -CUGgCUGG-CCUacUGGCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 101 0.72 0.582085
Target:  5'- cACCGaacGCCGGccGACCGCacgaaacgcCGACCGGa -3'
miRNA:   3'- cUGGC---UGGCCuaCUGGCGa--------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 178267 0.72 0.590743
Target:  5'- gGGCUGACCGGAgacgGggucggucgagcgACgGCUCGACgCGGg -3'
miRNA:   3'- -CUGGCUGGCCUa---C-------------UGgCGAGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 134600 0.72 0.591706
Target:  5'- gGGCCGAcuCCGGAucccgccgaguUGACCGCcaUCGccuGCCGGu -3'
miRNA:   3'- -CUGGCU--GGCCU-----------ACUGGCG--AGC---UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 44702 0.72 0.600387
Target:  5'- cGCCGcCCGGccgcGACCGCggcgacgUCGGCCGGc -3'
miRNA:   3'- cUGGCuGGCCua--CUGGCG-------AGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 14578 0.72 0.601353
Target:  5'- cGGCCGACCGaaGcgGGCCGUggcgagCGcGCCGGg -3'
miRNA:   3'- -CUGGCUGGC--CuaCUGGCGa-----GC-UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 12158 0.72 0.601353
Target:  5'- cGGCCGAucgcCCGGAUcGucgccgccgacGCCGCcgCGGCCGGg -3'
miRNA:   3'- -CUGGCU----GGCCUA-C-----------UGGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 156398 0.72 0.601353
Target:  5'- aGAgCGGCCGGcgccgcGGCCGCggccaCGGCCGGc -3'
miRNA:   3'- -CUgGCUGGCCua----CUGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 13724 0.71 0.611021
Target:  5'- cGACCGugCGGAcccACaCGCUccCGGCCGGc -3'
miRNA:   3'- -CUGGCugGCCUac-UG-GCGA--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 151647 0.71 0.620703
Target:  5'- cGCCGGCCGGcacuUGGCuCGC-CG-CCGGg -3'
miRNA:   3'- cUGGCUGGCCu---ACUG-GCGaGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 10182 0.71 0.630392
Target:  5'- aGACCuaGACCGGGcaaGuCCGCUaGACCGGu -3'
miRNA:   3'- -CUGG--CUGGCCUa--CuGGCGAgCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 131787 0.71 0.630392
Target:  5'- cGACCGACgGGAcuGCCGggCGACCa- -3'
miRNA:   3'- -CUGGCUGgCCUacUGGCgaGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 102751 0.71 0.640083
Target:  5'- uGGCCGAggacCCGGAcuacgUGGCCGCgc-ACCGGg -3'
miRNA:   3'- -CUGGCU----GGCCU-----ACUGGCGagcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 184842 0.71 0.6488
Target:  5'- cACCGcgcagcgauacguGCCGGAcGGCCGUUCGAaCGGg -3'
miRNA:   3'- cUGGC-------------UGGCCUaCUGGCGAGCUgGCC- -5'
10880 3' -58.7 NC_002794.1 + 35966 0.71 0.649768
Target:  5'- -cUCGACCGGAcgGGcCCGCUCGcggacCCGGu -3'
miRNA:   3'- cuGGCUGGCCUa-CU-GGCGAGCu----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 68502 0.71 0.649768
Target:  5'- cGGCCGugCGGGUGAuCUGCcagCGACUcuGGu -3'
miRNA:   3'- -CUGGCugGCCUACU-GGCGa--GCUGG--CC- -5'
10880 3' -58.7 NC_002794.1 + 108460 0.71 0.659441
Target:  5'- cGGCCcGCCGGcacgGGCCGaggggCGACCGGc -3'
miRNA:   3'- -CUGGcUGGCCua--CUGGCga---GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 18253 0.71 0.659441
Target:  5'- cGGCCGACCGGc-GACCGCgagaugCGcggcGCCGa -3'
miRNA:   3'- -CUGGCUGGCCuaCUGGCGa-----GC----UGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.