miRNA display CGI


Results 41 - 60 of 182 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 49129 0.7 0.669094
Target:  5'- gGACCGGCCGGA-GGUCGUugUCGACCc- -3'
miRNA:   3'- -CUGGCUGGCCUaCUGGCG--AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 44414 0.7 0.669094
Target:  5'- uGACCGGCCGGcgccgaGCgGCUCGAcgacaCCGGc -3'
miRNA:   3'- -CUGGCUGGCCuac---UGgCGAGCU-----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 32296 0.7 0.669094
Target:  5'- cGCCGccGCCGcGgcGGCCGCgccggccgCGGCCGGa -3'
miRNA:   3'- cUGGC--UGGC-CuaCUGGCGa-------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 22619 0.7 0.669094
Target:  5'- aGCCGAUCGG---GCCGCUCGAggcgcUCGGa -3'
miRNA:   3'- cUGGCUGGCCuacUGGCGAGCU-----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 146002 0.7 0.675835
Target:  5'- cGGCCG-CCGGGgccgGAgacgccgucccaguCCGCUCGAucuCCGGg -3'
miRNA:   3'- -CUGGCuGGCCUa---CU--------------GGCGAGCU---GGCC- -5'
10880 3' -58.7 NC_002794.1 + 86025 0.7 0.675835
Target:  5'- cGACCGugCGGcgGacaggccucaucggGCCGggucuaaUCGACCGGg -3'
miRNA:   3'- -CUGGCugGCCuaC--------------UGGCg------AGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 121394 0.7 0.67872
Target:  5'- gGACCGcgGCCGGcgccggGACCGCgacCGucGCCGGg -3'
miRNA:   3'- -CUGGC--UGGCCua----CUGGCGa--GC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 149009 0.7 0.67872
Target:  5'- cGACUGuuucaACCGGGUcauccucACCGaCUCGGCCGGa -3'
miRNA:   3'- -CUGGC-----UGGCCUAc------UGGC-GAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 76960 0.7 0.67872
Target:  5'- cGCCGuCCGGccGGCCcgccgaGCUCGACCuGGu -3'
miRNA:   3'- cUGGCuGGCCuaCUGG------CGAGCUGG-CC- -5'
10880 3' -58.7 NC_002794.1 + 185760 0.7 0.67872
Target:  5'- aGCCG-CCGGcgcGGCCGCccgucacacgUCGGCCGGc -3'
miRNA:   3'- cUGGCuGGCCua-CUGGCG----------AGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 120072 0.7 0.67872
Target:  5'- aGGCCGACgCGGcgGUGGCgGCgaCGACCGu -3'
miRNA:   3'- -CUGGCUG-GCC--UACUGgCGa-GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 43690 0.7 0.685438
Target:  5'- gGACCauGCCGGAgauccagguggugaUGACCGuCUCGGCCa- -3'
miRNA:   3'- -CUGGc-UGGCCU--------------ACUGGC-GAGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 86122 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 186262 0.7 0.697861
Target:  5'- -gUCGACCGGAUcACCGCcUGGCgCGGc -3'
miRNA:   3'- cuGGCUGGCCUAcUGGCGaGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 86266 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86458 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 181537 0.7 0.697861
Target:  5'- cGCCG-CCGGcgGGCCGgcgcuCUCGgucGCCGGg -3'
miRNA:   3'- cUGGCuGGCCuaCUGGC-----GAGC---UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 112340 0.7 0.697861
Target:  5'- cGCCGGCCGGcgGcGCCGg-CGGCgGGg -3'
miRNA:   3'- cUGGCUGGCCuaC-UGGCgaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 86626 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 128391 0.7 0.707362
Target:  5'- cGCCGAucCCGGAUGGgCGagggGACCGGg -3'
miRNA:   3'- cUGGCU--GGCCUACUgGCgag-CUGGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.