miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 150537 0.7 0.707362
Target:  5'- aGCCgGGCCGGcgccAUGGCCGuCUCGgcGCUGGa -3'
miRNA:   3'- cUGG-CUGGCC----UACUGGC-GAGC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 102679 0.7 0.707362
Target:  5'- uGGgCGACCGGGUGucguACgUGCUgaCGGCCGGg -3'
miRNA:   3'- -CUgGCUGGCCUAC----UG-GCGA--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 128391 0.7 0.707362
Target:  5'- cGCCGAucCCGGAUGGgCGagggGACCGGg -3'
miRNA:   3'- cUGGCU--GGCCUACUgGCgag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 40733 0.7 0.716805
Target:  5'- aGAUCGAUCGGcUGGCCGCaguagUCGAUCa- -3'
miRNA:   3'- -CUGGCUGGCCuACUGGCG-----AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 95821 0.69 0.726184
Target:  5'- cGGCggCGGCCGGGggagcGGCgGCggCGGCCGGg -3'
miRNA:   3'- -CUG--GCUGGCCUa----CUGgCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 37765 0.69 0.726184
Target:  5'- cGCCGGCgGGAgcGGCCGUcgucgUCGGCCGc -3'
miRNA:   3'- cUGGCUGgCCUa-CUGGCG-----AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 107763 0.69 0.73549
Target:  5'- cGCUGGCUGGA--GCgCGCUCGcCCGGc -3'
miRNA:   3'- cUGGCUGGCCUacUG-GCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 50590 0.69 0.73549
Target:  5'- --gCGGCUGGGUGGCCGg-CG-CCGGg -3'
miRNA:   3'- cugGCUGGCCUACUGGCgaGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 84322 0.69 0.73549
Target:  5'- gGGCCGcCCGaGA--GCCGcCUCGACCGa -3'
miRNA:   3'- -CUGGCuGGC-CUacUGGC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 192374 0.69 0.744715
Target:  5'- cGACCGAgCgCGGGcUGACCGCcacCGccgcGCCGGg -3'
miRNA:   3'- -CUGGCU-G-GCCU-ACUGGCGa--GC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 149215 0.69 0.744715
Target:  5'- cGGCUGGCCGGAaGcgaggcgccGCCGCcgUCG-CCGGg -3'
miRNA:   3'- -CUGGCUGGCCUaC---------UGGCG--AGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 70344 0.69 0.753852
Target:  5'- --aCGGCCGGgcGcCCGCUCGuCCGc -3'
miRNA:   3'- cugGCUGGCCuaCuGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 82669 0.69 0.761993
Target:  5'- cGCCGcGCCGGcgGaucgcacGCCGUUCGcCCGGc -3'
miRNA:   3'- cUGGC-UGGCCuaC-------UGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 148805 0.69 0.762892
Target:  5'- cGCCGAgcacgcggagauCUGGA-GACUGCcccgCGACCGGg -3'
miRNA:   3'- cUGGCU------------GGCCUaCUGGCGa---GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 189879 0.69 0.762892
Target:  5'- cGCCGACCGGc---CCGCUCGggcccGCCGu -3'
miRNA:   3'- cUGGCUGGCCuacuGGCGAGC-----UGGCc -5'
10880 3' -58.7 NC_002794.1 + 128422 0.69 0.762892
Target:  5'- aGACCgggauGACCGGGUGGcCCGCgcgcacggCGccuCCGGa -3'
miRNA:   3'- -CUGG-----CUGGCCUACU-GGCGa-------GCu--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 108139 0.69 0.762892
Target:  5'- cGCCGGCUGGAUucGCCGC-CGggagcGCCGGc -3'
miRNA:   3'- cUGGCUGGCCUAc-UGGCGaGC-----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 68751 0.68 0.771829
Target:  5'- aGGCCGACUGaGccgGGCCGC-CGgggcGCCGGa -3'
miRNA:   3'- -CUGGCUGGC-Cua-CUGGCGaGC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 123263 0.68 0.771829
Target:  5'- cGCCGGCUGGuccgGGCCGCggUCGuCgCGGg -3'
miRNA:   3'- cUGGCUGGCCua--CUGGCG--AGCuG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 189658 0.68 0.771829
Target:  5'- aGCCGGCUGGccGAgcggUCGCccCGGCCGGg -3'
miRNA:   3'- cUGGCUGGCCuaCU----GGCGa-GCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.