miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 137152 0.66 0.881959
Target:  5'- cGGCCGGCCGcccucGGUcccGGCCGCUCGcucGCCc- -3'
miRNA:   3'- -CUGGCUGGC-----CUA---CUGGCGAGC---UGGcc -5'
10880 3' -58.7 NC_002794.1 + 149967 0.66 0.881959
Target:  5'- uGGCCGACCugccGcgGACCGg-CGGCCGc -3'
miRNA:   3'- -CUGGCUGGc---CuaCUGGCgaGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 145794 0.66 0.881959
Target:  5'- cGGCCGGCuCGGAcGACgaCGC-CGccGCCGGc -3'
miRNA:   3'- -CUGGCUG-GCCUaCUG--GCGaGC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 18620 0.66 0.881294
Target:  5'- cACCGGCCGccccuccGAcGcCCGCUCcGCCGGc -3'
miRNA:   3'- cUGGCUGGC-------CUaCuGGCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 94289 0.66 0.875216
Target:  5'- -cCCGAgCGGggGGCgGCUCGggcgcGCCGa -3'
miRNA:   3'- cuGGCUgGCCuaCUGgCGAGC-----UGGCc -5'
10880 3' -58.7 NC_002794.1 + 111261 0.66 0.875216
Target:  5'- cGGCCGGCaGGAUgcgGACCGC-CaGCUGGu -3'
miRNA:   3'- -CUGGCUGgCCUA---CUGGCGaGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140690 0.66 0.875216
Target:  5'- gGugCGA-CGGAccGGCCGCcgCGACcCGGg -3'
miRNA:   3'- -CugGCUgGCCUa-CUGGCGa-GCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 191009 0.66 0.875216
Target:  5'- cGAUCGGCCGuucGAUcGGCaCGUUCaGCCGGa -3'
miRNA:   3'- -CUGGCUGGC---CUA-CUG-GCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 133161 0.66 0.875216
Target:  5'- cGCCGACgacGUGACuCGCUCGAcgauCCGGu -3'
miRNA:   3'- cUGGCUGgccUACUG-GCGAGCU----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 140271 0.66 0.874531
Target:  5'- aGCUcGCCGcGAUGACCGCguuuuugggccucUCGGCCa- -3'
miRNA:   3'- cUGGcUGGC-CUACUGGCG-------------AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 80433 0.66 0.868278
Target:  5'- gGGCCGccGCCGGc-GGCCGC-CGGCCc- -3'
miRNA:   3'- -CUGGC--UGGCCuaCUGGCGaGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 81408 0.66 0.868278
Target:  5'- -cCCGGCuCGGGa-GCUGCUCGcCCGGc -3'
miRNA:   3'- cuGGCUG-GCCUacUGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 77794 0.66 0.868278
Target:  5'- aGAUCGugcaGCCGGAgcaACCGCUCGcCCa- -3'
miRNA:   3'- -CUGGC----UGGCCUac-UGGCGAGCuGGcc -5'
10880 3' -58.7 NC_002794.1 + 133510 0.66 0.868278
Target:  5'- -uCCGACgGcGAccUGGCCGUUgaguuggcCGACCGGg -3'
miRNA:   3'- cuGGCUGgC-CU--ACUGGCGA--------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 99853 0.66 0.868278
Target:  5'- cGACCaGGCCGa--GACCGUcgugUCGGCCGa -3'
miRNA:   3'- -CUGG-CUGGCcuaCUGGCG----AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 143752 0.66 0.868278
Target:  5'- cGCCG-CCGGggGGcuCCGCUCGucgUCGGu -3'
miRNA:   3'- cUGGCuGGCCuaCU--GGCGAGCu--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 148981 0.66 0.868278
Target:  5'- cGGCCGACCuc-UGGgUGCUCGGUCGGa -3'
miRNA:   3'- -CUGGCUGGccuACUgGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 66410 0.66 0.868278
Target:  5'- cGCCGACCGugcGAaGACgGCgguugCGACCGu -3'
miRNA:   3'- cUGGCUGGC---CUaCUGgCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 49583 0.67 0.861149
Target:  5'- -gUCGACCGGAUcccGAUCGCgaucggCGACggCGGg -3'
miRNA:   3'- cuGGCUGGCCUA---CUGGCGa-----GCUG--GCC- -5'
10880 3' -58.7 NC_002794.1 + 18806 0.67 0.861149
Target:  5'- cGCCGGCCaacGGGUcGGCgacCUCGGCCGGc -3'
miRNA:   3'- cUGGCUGG---CCUA-CUGgc-GAGCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.