miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 15166 0.67 0.861149
Target:  5'- aACCG-CaGGAgGGCCGUUCG-CCGGa -3'
miRNA:   3'- cUGGCuGgCCUaCUGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 18806 0.67 0.861149
Target:  5'- cGCCGGCCaacGGGUcGGCgacCUCGGCCGGc -3'
miRNA:   3'- cUGGCUGG---CCUA-CUGgc-GAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 49583 0.67 0.861149
Target:  5'- -gUCGACCGGAUcccGAUCGCgaucggCGACggCGGg -3'
miRNA:   3'- cuGGCUGGCCUA---CUGGCGa-----GCUG--GCC- -5'
10880 3' -58.7 NC_002794.1 + 71865 0.67 0.861149
Target:  5'- cGCCGGCCaGAcu-CCGCUCGACgucgUGGa -3'
miRNA:   3'- cUGGCUGGcCUacuGGCGAGCUG----GCC- -5'
10880 3' -58.7 NC_002794.1 + 43250 0.67 0.858975
Target:  5'- cGGCCGgaacGCCGGGUGGuagcacucgcagauCCGCU--GCCGGc -3'
miRNA:   3'- -CUGGC----UGGCCUACU--------------GGCGAgcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 154257 0.67 0.853836
Target:  5'- aGACUugGACCGGGgucuggucccGACCGC-CGGCgCGGc -3'
miRNA:   3'- -CUGG--CUGGCCUa---------CUGGCGaGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 189358 0.67 0.853836
Target:  5'- -uUCGACgGGAUGcccaggcugaGCCGCUCG-CCGc -3'
miRNA:   3'- cuGGCUGgCCUAC----------UGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 11855 0.67 0.853836
Target:  5'- cGACCG-CCGGcgacGACCGCccgccccgCGACgGGu -3'
miRNA:   3'- -CUGGCuGGCCua--CUGGCGa-------GCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 67932 0.67 0.853836
Target:  5'- cGAgCGACgGGgcGAUgGcCUCGACCGa -3'
miRNA:   3'- -CUgGCUGgCCuaCUGgC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 44244 0.67 0.853836
Target:  5'- cGGgCGGCuCGGugccgGGCgGCUCGGCCGc -3'
miRNA:   3'- -CUgGCUG-GCCua---CUGgCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 189960 0.67 0.853836
Target:  5'- gGACCGACggaCGGGccGcCCGCUCGcCCGa -3'
miRNA:   3'- -CUGGCUG---GCCUa-CuGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 132896 0.67 0.853836
Target:  5'- cGCCGcCCGGAc--CUGCggCGGCCGGu -3'
miRNA:   3'- cUGGCuGGCCUacuGGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 47963 0.67 0.852351
Target:  5'- cGCCGGCUGGgcGACCGCcgcgcgcuccucCGACCc- -3'
miRNA:   3'- cUGGCUGGCCuaCUGGCGa-----------GCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 98934 0.67 0.846342
Target:  5'- gGGCgCGGCCGGGaaggGGCUgggGCUCGuGCUGGg -3'
miRNA:   3'- -CUG-GCUGGCCUa---CUGG---CGAGC-UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86892 0.67 0.846342
Target:  5'- -cCCGAucCCGGcggGGCCGC-CGAcCCGGu -3'
miRNA:   3'- cuGGCU--GGCCua-CUGGCGaGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 126096 0.67 0.846342
Target:  5'- cGACCGACUGGcuuccGGCCcugggcgccgcGCUCGucugcGCCGGu -3'
miRNA:   3'- -CUGGCUGGCCua---CUGG-----------CGAGC-----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 96724 0.67 0.846342
Target:  5'- cGGCCGAgCCGGcgacGACCGC-CGGCgCGu -3'
miRNA:   3'- -CUGGCU-GGCCua--CUGGCGaGCUG-GCc -5'
10880 3' -58.7 NC_002794.1 + 159267 0.67 0.846342
Target:  5'- aGAUCGACguuGUGACUGaCUCGACCGa -3'
miRNA:   3'- -CUGGCUGgccUACUGGC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 89971 0.67 0.846342
Target:  5'- -uCgGACCGuGGUGcGCCggcGUUCGACCGGu -3'
miRNA:   3'- cuGgCUGGC-CUAC-UGG---CGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 135548 0.67 0.838674
Target:  5'- cGACCGACCGaauagGGgCGCa-GGCCGGc -3'
miRNA:   3'- -CUGGCUGGCcua--CUgGCGagCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.