miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 87088 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87214 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87172 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87130 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 134172 0.67 0.838674
Target:  5'- uGGCCG-CgCGGAUGGCCacCUCGuAUCGGc -3'
miRNA:   3'- -CUGGCuG-GCCUACUGGc-GAGC-UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87256 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 16314 0.67 0.838674
Target:  5'- cGGCCGGCUGGAUccccCUGCcccUGGCCGGc -3'
miRNA:   3'- -CUGGCUGGCCUAcu--GGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 155890 0.67 0.838674
Target:  5'- aGACacgaGAUCGGAauaGACCgGCUCGACgugCGGa -3'
miRNA:   3'- -CUGg---CUGGCCUa--CUGG-CGAGCUG---GCC- -5'
10880 3' -58.7 NC_002794.1 + 135548 0.67 0.838674
Target:  5'- cGACCGACCGaauagGGgCGCa-GGCCGGc -3'
miRNA:   3'- -CUGGCUGGCcua--CUgGCGagCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 76808 0.67 0.838674
Target:  5'- cGACCaccgGACCGGAcGuCaCGCcagCGGCCGGc -3'
miRNA:   3'- -CUGG----CUGGCCUaCuG-GCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140407 0.67 0.837898
Target:  5'- -uCCGACguuaucuCGGGUGGCCGCgaCGuacaACCGGa -3'
miRNA:   3'- cuGGCUG-------GCCUACUGGCGa-GC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 111104 0.67 0.83712
Target:  5'- -cCCGGCgGGAccgUGGCCGUcgacggcgccggCGGCCGGu -3'
miRNA:   3'- cuGGCUGgCCU---ACUGGCGa-----------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 51358 0.67 0.830837
Target:  5'- aGCCGcCCGaGgcGGCCGCcccgucCGGCCGGc -3'
miRNA:   3'- cUGGCuGGC-CuaCUGGCGa-----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 148667 0.67 0.830837
Target:  5'- cGACCGAggagCGGAUGuacgugcucaGCCGCUCGuggaacacuuuCCGGu -3'
miRNA:   3'- -CUGGCUg---GCCUAC----------UGGCGAGCu----------GGCC- -5'
10880 3' -58.7 NC_002794.1 + 153668 0.67 0.830837
Target:  5'- cGGCCG-CCGGuuGUGAggcucgaCGCgCGACCGGc -3'
miRNA:   3'- -CUGGCuGGCC--UACUg------GCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 120441 0.67 0.830837
Target:  5'- aGCCGGCgUGGAacGCCGCgUCGGCCuGGc -3'
miRNA:   3'- cUGGCUG-GCCUacUGGCG-AGCUGG-CC- -5'
10880 3' -58.7 NC_002794.1 + 187189 0.67 0.830837
Target:  5'- cGCCcaGCCGGAUGACCaGCacccCGACCa- -3'
miRNA:   3'- cUGGc-UGGCCUACUGG-CGa---GCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 127745 0.67 0.822839
Target:  5'- --aCGGCCGGAgGACCGUUggaGACCa- -3'
miRNA:   3'- cugGCUGGCCUaCUGGCGAg--CUGGcc -5'
10880 3' -58.7 NC_002794.1 + 191802 0.67 0.822839
Target:  5'- cGACCGcCCGcucGGCCGCUCGAggaCCGc -3'
miRNA:   3'- -CUGGCuGGCcuaCUGGCGAGCU---GGCc -5'
10880 3' -58.7 NC_002794.1 + 105417 0.67 0.822839
Target:  5'- -cUCGGCCuccaGGGUGGCCGC-CGccgcGCCGGc -3'
miRNA:   3'- cuGGCUGG----CCUACUGGCGaGC----UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.