miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 94014 0.68 0.814685
Target:  5'- cGGCgGGCCGGcgGGuuCCGC-CGGCgGGc -3'
miRNA:   3'- -CUGgCUGGCCuaCU--GGCGaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 19496 0.68 0.814685
Target:  5'- cACCGACgacggCGGAggucgcGCCGCUCGgagcGCCGGc -3'
miRNA:   3'- cUGGCUG-----GCCUac----UGGCGAGC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 121804 0.68 0.809721
Target:  5'- cGACCGGCCGGcgccuGCCGCUgcaggaucgcuacgaCGGCCa- -3'
miRNA:   3'- -CUGGCUGGCCuac--UGGCGA---------------GCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 104250 0.68 0.806382
Target:  5'- aGAUCuugaGCuCGGGcaGCCGCUCGGCCGGc -3'
miRNA:   3'- -CUGGc---UG-GCCUacUGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 191369 0.68 0.806382
Target:  5'- gGACgGGCCGGAcccuCCGCgcccgCGGCCGc -3'
miRNA:   3'- -CUGgCUGGCCUacu-GGCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 32862 0.68 0.806382
Target:  5'- cGGCCGAgCCGGcgGGCgGCggCGGCggCGGc -3'
miRNA:   3'- -CUGGCU-GGCCuaCUGgCGa-GCUG--GCC- -5'
10880 3' -58.7 NC_002794.1 + 34798 0.68 0.805544
Target:  5'- cGGCCGaACCGGcccgGGCCGCgCGacaccacccccucGCCGGc -3'
miRNA:   3'- -CUGGC-UGGCCua--CUGGCGaGC-------------UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 146361 0.68 0.797938
Target:  5'- cGGCCGcCCGGGUagccGuCCGCUCGuCCa- -3'
miRNA:   3'- -CUGGCuGGCCUA----CuGGCGAGCuGGcc -5'
10880 3' -58.7 NC_002794.1 + 13082 0.68 0.797938
Target:  5'- cGACCGGcgcgaagucCCGGGggacgagGugCGUUCGGCgGGg -3'
miRNA:   3'- -CUGGCU---------GGCCUa------CugGCGAGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 111615 0.68 0.797938
Target:  5'- aGGCCGGCgGGGccGCCGCggcCGccGCCGGu -3'
miRNA:   3'- -CUGGCUGgCCUacUGGCGa--GC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 63902 0.68 0.797086
Target:  5'- cGCCGGCCGucgcucgcgccgcGAccGCCGCcCGGCCGGc -3'
miRNA:   3'- cUGGCUGGC-------------CUacUGGCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 51964 0.68 0.78936
Target:  5'- aGGCCuccggGACCGGcaucGUGG-CGCUCGGCCGc -3'
miRNA:   3'- -CUGG-----CUGGCC----UACUgGCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 100350 0.68 0.78936
Target:  5'- cGACCGccgaGCUGGAggugGACUGCgaggUGGCCGa -3'
miRNA:   3'- -CUGGC----UGGCCUa---CUGGCGa---GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 61512 0.68 0.78936
Target:  5'- cGCCcGCCGGAcggcGGCCGCcggCGGCCGc -3'
miRNA:   3'- cUGGcUGGCCUa---CUGGCGa--GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 183581 0.68 0.788495
Target:  5'- gGGCCuuuaauacgguggGGgCGGAggggGGCCGCgcgCGGCCGGc -3'
miRNA:   3'- -CUGG-------------CUgGCCUa---CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 50728 0.68 0.786761
Target:  5'- cGCCGcCCGGGgcGGCCGCcUCGAcucgcucguccgccCCGGg -3'
miRNA:   3'- cUGGCuGGCCUa-CUGGCG-AGCU--------------GGCC- -5'
10880 3' -58.7 NC_002794.1 + 143272 0.68 0.780654
Target:  5'- -cCCGGcCCGGcgccGGCCGCUCGGggUCGGg -3'
miRNA:   3'- cuGGCU-GGCCua--CUGGCGAGCU--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 106231 0.68 0.780654
Target:  5'- cGGCCGcGCuCGGGUcgcaGACCGCcgCGaACCGGc -3'
miRNA:   3'- -CUGGC-UG-GCCUA----CUGGCGa-GC-UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 20026 0.68 0.780654
Target:  5'- aGACCGAgagcgcgguCCGGAUcg-CGCUCGACCa- -3'
miRNA:   3'- -CUGGCU---------GGCCUAcugGCGAGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 140000 0.68 0.780654
Target:  5'- gGACgGugCGGGUGgagGCCGCggaGGCCGcGg -3'
miRNA:   3'- -CUGgCugGCCUAC---UGGCGag-CUGGC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.