miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 20282 0.66 0.888504
Target:  5'- cGACCGaaccGCCGGAaGACCaagcgcucugGCUCGAgaUGGa -3'
miRNA:   3'- -CUGGC----UGGCCUaCUGG----------CGAGCUg-GCC- -5'
10880 3' -58.7 NC_002794.1 + 21879 0.66 0.881959
Target:  5'- aGGCCGGCCgcgGGGUGuCCGCggccugCG-UCGGu -3'
miRNA:   3'- -CUGGCUGG---CCUACuGGCGa-----GCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 22619 0.7 0.669094
Target:  5'- aGCCGAUCGG---GCCGCUCGAggcgcUCGGa -3'
miRNA:   3'- cUGGCUGGCCuacUGGCGAGCU-----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 22793 0.79 0.256406
Target:  5'- cGACCGACCGaccGACCGCUCGACUc- -3'
miRNA:   3'- -CUGGCUGGCcuaCUGGCGAGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 27392 1.09 0.00272
Target:  5'- cGACCGACCGGAUGACCGCUCGACCGGc -3'
miRNA:   3'- -CUGGCUGGCCUACUGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 32296 0.7 0.669094
Target:  5'- cGCCGccGCCGcGgcGGCCGCgccggccgCGGCCGGa -3'
miRNA:   3'- cUGGC--UGGC-CuaCUGGCGa-------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 32862 0.68 0.806382
Target:  5'- cGGCCGAgCCGGcgGGCgGCggCGGCggCGGc -3'
miRNA:   3'- -CUGGCU-GGCCuaCUGgCGa-GCUG--GCC- -5'
10880 3' -58.7 NC_002794.1 + 34798 0.68 0.805544
Target:  5'- cGGCCGaACCGGcccgGGCCGCgCGacaccacccccucGCCGGc -3'
miRNA:   3'- -CUGGC-UGGCCua--CUGGCGaGC-------------UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 35966 0.71 0.649768
Target:  5'- -cUCGACCGGAcgGGcCCGCUCGcggacCCGGu -3'
miRNA:   3'- cuGGCUGGCCUa-CU-GGCGAGCu----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 37765 0.69 0.726184
Target:  5'- cGCCGGCgGGAgcGGCCGUcgucgUCGGCCGc -3'
miRNA:   3'- cUGGCUGgCCUa-CUGGCG-----AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 40733 0.7 0.716805
Target:  5'- aGAUCGAUCGGcUGGCCGCaguagUCGAUCa- -3'
miRNA:   3'- -CUGGCUGGCCuACUGGCG-----AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 43250 0.67 0.858975
Target:  5'- cGGCCGgaacGCCGGGUGGuagcacucgcagauCCGCU--GCCGGc -3'
miRNA:   3'- -CUGGC----UGGCCUACU--------------GGCGAgcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 43690 0.7 0.685438
Target:  5'- gGACCauGCCGGAgauccagguggugaUGACCGuCUCGGCCa- -3'
miRNA:   3'- -CUGGc-UGGCCU--------------ACUGGC-GAGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 44244 0.67 0.853836
Target:  5'- cGGgCGGCuCGGugccgGGCgGCUCGGCCGc -3'
miRNA:   3'- -CUgGCUG-GCCua---CUGgCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 44414 0.7 0.669094
Target:  5'- uGACCGGCCGGcgccgaGCgGCUCGAcgacaCCGGc -3'
miRNA:   3'- -CUGGCUGGCCuac---UGgCGAGCU-----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 44702 0.72 0.600387
Target:  5'- cGCCGcCCGGccgcGACCGCggcgacgUCGGCCGGc -3'
miRNA:   3'- cUGGCuGGCCua--CUGGCG-------AGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 47963 0.67 0.852351
Target:  5'- cGCCGGCUGGgcGACCGCcgcgcgcuccucCGACCc- -3'
miRNA:   3'- cUGGCUGGCCuaCUGGCGa-----------GCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 48073 0.72 0.553439
Target:  5'- uGGCCGGCCagcgGGAgcagccGCCGCUCG-CCGGc -3'
miRNA:   3'- -CUGGCUGG----CCUac----UGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 49129 0.7 0.669094
Target:  5'- gGACCGGCCGGA-GGUCGUugUCGACCc- -3'
miRNA:   3'- -CUGGCUGGCCUaCUGGCG--AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 49583 0.67 0.861149
Target:  5'- -gUCGACCGGAUcccGAUCGCgaucggCGACggCGGg -3'
miRNA:   3'- cuGGCUGGCCUA---CUGGCGa-----GCUG--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.