miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 50351 0.68 0.771829
Target:  5'- cACCGGCUccgccAUGACCGCggagcCGGCCGGc -3'
miRNA:   3'- cUGGCUGGcc---UACUGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 50590 0.69 0.73549
Target:  5'- --gCGGCUGGGUGGCCGg-CG-CCGGg -3'
miRNA:   3'- cugGCUGGCCUACUGGCgaGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 50728 0.68 0.786761
Target:  5'- cGCCGcCCGGGgcGGCCGCcUCGAcucgcucguccgccCCGGg -3'
miRNA:   3'- cUGGCuGGCCUa-CUGGCG-AGCU--------------GGCC- -5'
10880 3' -58.7 NC_002794.1 + 51358 0.67 0.830837
Target:  5'- aGCCGcCCGaGgcGGCCGCcccgucCGGCCGGc -3'
miRNA:   3'- cUGGCuGGC-CuaCUGGCGa-----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 51964 0.68 0.78936
Target:  5'- aGGCCuccggGACCGGcaucGUGG-CGCUCGGCCGc -3'
miRNA:   3'- -CUGG-----CUGGCC----UACUgGCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 61512 0.68 0.78936
Target:  5'- cGCCcGCCGGAcggcGGCCGCcggCGGCCGc -3'
miRNA:   3'- cUGGcUGGCCUa---CUGGCGa--GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 63902 0.68 0.797086
Target:  5'- cGCCGGCCGucgcucgcgccgcGAccGCCGCcCGGCCGGc -3'
miRNA:   3'- cUGGCUGGC-------------CUacUGGCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 66410 0.66 0.868278
Target:  5'- cGCCGACCGugcGAaGACgGCgguugCGACCGu -3'
miRNA:   3'- cUGGCUGGC---CUaCUGgCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 67194 0.75 0.418179
Target:  5'- gGACCGAaaagcguCCGGGcgGugCGCUCGgcGCCGGg -3'
miRNA:   3'- -CUGGCU-------GGCCUa-CugGCGAGC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 67932 0.67 0.853836
Target:  5'- cGAgCGACgGGgcGAUgGcCUCGACCGa -3'
miRNA:   3'- -CUgGCUGgCCuaCUGgC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 68502 0.71 0.649768
Target:  5'- cGGCCGugCGGGUGAuCUGCcagCGACUcuGGu -3'
miRNA:   3'- -CUGGCugGCCUACU-GGCGa--GCUGG--CC- -5'
10880 3' -58.7 NC_002794.1 + 68751 0.68 0.771829
Target:  5'- aGGCCGACUGaGccgGGCCGC-CGgggcGCCGGa -3'
miRNA:   3'- -CUGGCUGGC-Cua-CUGGCGaGC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 70344 0.69 0.753852
Target:  5'- --aCGGCCGGgcGcCCGCUCGuCCGc -3'
miRNA:   3'- cugGCUGGCCuaCuGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 71865 0.67 0.861149
Target:  5'- cGCCGGCCaGAcu-CCGCUCGACgucgUGGa -3'
miRNA:   3'- cUGGCUGGcCUacuGGCGAGCUG----GCC- -5'
10880 3' -58.7 NC_002794.1 + 73574 0.66 0.900981
Target:  5'- cACCGACUGGAUcGacgccaaggcGCCGUaCGACgGGu -3'
miRNA:   3'- cUGGCUGGCCUA-C----------UGGCGaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 75263 0.66 0.900981
Target:  5'- aACCGAcCCGGcuccACCGCccaccCGGCCGGc -3'
miRNA:   3'- cUGGCU-GGCCuac-UGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 76808 0.67 0.838674
Target:  5'- cGACCaccgGACCGGAcGuCaCGCcagCGGCCGGc -3'
miRNA:   3'- -CUGG----CUGGCCUaCuG-GCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 76960 0.7 0.67872
Target:  5'- cGCCGuCCGGccGGCCcgccgaGCUCGACCuGGu -3'
miRNA:   3'- cUGGCuGGCCuaCUGG------CGAGCUGG-CC- -5'
10880 3' -58.7 NC_002794.1 + 77003 0.66 0.900981
Target:  5'- cACCGucACCGGGauGCCGCcggcgcaccUCGACCGc -3'
miRNA:   3'- cUGGC--UGGCCUacUGGCG---------AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 77794 0.66 0.868278
Target:  5'- aGAUCGugcaGCCGGAgcaACCGCUCGcCCa- -3'
miRNA:   3'- -CUGGC----UGGCCUac-UGGCGAGCuGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.