miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 78685 0.66 0.894845
Target:  5'- cGCCGGCCGcAUGugCGgC-CGACaCGGc -3'
miRNA:   3'- cUGGCUGGCcUACugGC-GaGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 80433 0.66 0.868278
Target:  5'- gGGCCGccGCCGGc-GGCCGC-CGGCCc- -3'
miRNA:   3'- -CUGGC--UGGCCuaCUGGCGaGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 81408 0.66 0.868278
Target:  5'- -cCCGGCuCGGGa-GCUGCUCGcCCGGc -3'
miRNA:   3'- cuGGCUG-GCCUacUGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 82669 0.69 0.761993
Target:  5'- cGCCGcGCCGGcgGaucgcacGCCGUUCGcCCGGc -3'
miRNA:   3'- cUGGC-UGGCCuaC-------UGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 82858 0.66 0.881959
Target:  5'- aGCgCGACCGc--GACCGCgaccgCGACCGu -3'
miRNA:   3'- cUG-GCUGGCcuaCUGGCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 83839 0.66 0.894845
Target:  5'- cGGCCGAUCGG----UCGC-CGAUCGGg -3'
miRNA:   3'- -CUGGCUGGCCuacuGGCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 84322 0.69 0.73549
Target:  5'- gGGCCGcCCGaGA--GCCGcCUCGACCGa -3'
miRNA:   3'- -CUGGCuGGC-CUacUGGC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 84755 0.74 0.488505
Target:  5'- cGACCGGCCGcGAgagGGCCGUcCGAggcCCGGc -3'
miRNA:   3'- -CUGGCUGGC-CUa--CUGGCGaGCU---GGCC- -5'
10880 3' -58.7 NC_002794.1 + 86025 0.7 0.675835
Target:  5'- cGACCGugCGGcgGacaggccucaucggGCCGggucuaaUCGACCGGg -3'
miRNA:   3'- -CUGGCugGCCuaC--------------UGGCg------AGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86122 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86186 0.75 0.392936
Target:  5'- gGGCCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86266 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86330 0.77 0.346979
Target:  5'- gGACCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86378 0.75 0.392936
Target:  5'- gGGCCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86458 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86498 0.77 0.346979
Target:  5'- gGACCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86546 0.75 0.392936
Target:  5'- gGGCCGAgCCGGGacggaugcuccgGGCCGCgccCGACCGGa -3'
miRNA:   3'- -CUGGCU-GGCCUa-----------CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86626 0.7 0.697861
Target:  5'- -cCCGACCGGAUGcuCCGgaCcgaGCCGGg -3'
miRNA:   3'- cuGGCUGGCCUACu-GGCgaGc--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 86892 0.67 0.846342
Target:  5'- -cCCGAucCCGGcggGGCCGC-CGAcCCGGu -3'
miRNA:   3'- cuGGCU--GGCCua-CUGGCGaGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 87088 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.