miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 87130 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87172 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87214 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 87256 0.67 0.838674
Target:  5'- aGGCCGGgCGGGUGGggGUgcaGGCCGGg -3'
miRNA:   3'- -CUGGCUgGCCUACUggCGag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 89971 0.67 0.846342
Target:  5'- -uCgGACCGuGGUGcGCCggcGUUCGACCGGu -3'
miRNA:   3'- cuGgCUGGC-CUAC-UGG---CGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 90674 0.73 0.515942
Target:  5'- gGGCCGGCCGcGUGGCUGUUCGugUGc -3'
miRNA:   3'- -CUGGCUGGCcUACUGGCGAGCugGCc -5'
10880 3' -58.7 NC_002794.1 + 94014 0.68 0.814685
Target:  5'- cGGCgGGCCGGcgGGuuCCGC-CGGCgGGc -3'
miRNA:   3'- -CUGgCUGGCCuaCU--GGCGaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 94289 0.66 0.875216
Target:  5'- -cCCGAgCGGggGGCgGCUCGggcgcGCCGa -3'
miRNA:   3'- cuGGCUgGCCuaCUGgCGAGC-----UGGCc -5'
10880 3' -58.7 NC_002794.1 + 95761 0.66 0.881959
Target:  5'- cGCgGGgCGGc-GGCCGCgacggCGGCCGGg -3'
miRNA:   3'- cUGgCUgGCCuaCUGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 95821 0.69 0.726184
Target:  5'- cGGCggCGGCCGGGggagcGGCgGCggCGGCCGGg -3'
miRNA:   3'- -CUG--GCUGGCCUa----CUGgCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 96724 0.67 0.846342
Target:  5'- cGGCCGAgCCGGcgacGACCGC-CGGCgCGu -3'
miRNA:   3'- -CUGGCU-GGCCua--CUGGCGaGCUG-GCc -5'
10880 3' -58.7 NC_002794.1 + 98353 0.73 0.525227
Target:  5'- cGACCGGCC-GAUcGCCGCgCGGCUGGc -3'
miRNA:   3'- -CUGGCUGGcCUAcUGGCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 98934 0.67 0.846342
Target:  5'- gGGCgCGGCCGGGaaggGGCUgggGCUCGuGCUGGg -3'
miRNA:   3'- -CUG-GCUGGCCUa---CUGG---CGAGC-UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 99853 0.66 0.868278
Target:  5'- cGACCaGGCCGa--GACCGUcgugUCGGCCGa -3'
miRNA:   3'- -CUGG-CUGGCcuaCUGGCG----AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 99924 0.73 0.515942
Target:  5'- cGCCGugCGGcGUGgucuugcgGCUGUUCGGCCGGa -3'
miRNA:   3'- cUGGCugGCC-UAC--------UGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 100350 0.68 0.78936
Target:  5'- cGACCGccgaGCUGGAggugGACUGCgaggUGGCCGa -3'
miRNA:   3'- -CUGGC----UGGCCUa---CUGGCGa---GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 101567 0.79 0.268229
Target:  5'- cGCCGGCgGGAgugccGGCCGCcgCGGCCGGg -3'
miRNA:   3'- cUGGCUGgCCUa----CUGGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 102679 0.7 0.707362
Target:  5'- uGGgCGACCGGGUGucguACgUGCUgaCGGCCGGg -3'
miRNA:   3'- -CUgGCUGGCCUAC----UG-GCGA--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 102751 0.71 0.640083
Target:  5'- uGGCCGAggacCCGGAcuacgUGGCCGCgc-ACCGGg -3'
miRNA:   3'- -CUGGCU----GGCCU-----ACUGGCGagcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 104250 0.68 0.806382
Target:  5'- aGAUCuugaGCuCGGGcaGCCGCUCGGCCGGc -3'
miRNA:   3'- -CUGGc---UG-GCCUacUGGCGAGCUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.