miRNA display CGI


Results 1 - 20 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 195580 0.66 0.888504
Target:  5'- cGACCGACCGccgGACCGgC-CGACgCGc -3'
miRNA:   3'- -CUGGCUGGCcuaCUGGC-GaGCUG-GCc -5'
10880 3' -58.7 NC_002794.1 + 192374 0.69 0.744715
Target:  5'- cGACCGAgCgCGGGcUGACCGCcacCGccgcGCCGGg -3'
miRNA:   3'- -CUGGCU-G-GCCU-ACUGGCGa--GC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 191802 0.67 0.822839
Target:  5'- cGACCGcCCGcucGGCCGCUCGAggaCCGc -3'
miRNA:   3'- -CUGGCuGGCcuaCUGGCGAGCU---GGCc -5'
10880 3' -58.7 NC_002794.1 + 191369 0.68 0.806382
Target:  5'- gGACgGGCCGGAcccuCCGCgcccgCGGCCGc -3'
miRNA:   3'- -CUGgCUGGCCUacu-GGCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 191009 0.66 0.875216
Target:  5'- cGAUCGGCCGuucGAUcGGCaCGUUCaGCCGGa -3'
miRNA:   3'- -CUGGCUGGC---CUA-CUG-GCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 189960 0.67 0.853836
Target:  5'- gGACCGACggaCGGGccGcCCGCUCGcCCGa -3'
miRNA:   3'- -CUGGCUG---GCCUa-CuGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 189879 0.69 0.762892
Target:  5'- cGCCGACCGGc---CCGCUCGggcccGCCGu -3'
miRNA:   3'- cUGGCUGGCCuacuGGCGAGC-----UGGCc -5'
10880 3' -58.7 NC_002794.1 + 189658 0.68 0.771829
Target:  5'- aGCCGGCUGGccGAgcggUCGCccCGGCCGGg -3'
miRNA:   3'- cUGGCUGGCCuaCU----GGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 189358 0.67 0.853836
Target:  5'- -uUCGACgGGAUGcccaggcugaGCCGCUCG-CCGc -3'
miRNA:   3'- cuGGCUGgCCUAC----------UGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 189019 0.72 0.553439
Target:  5'- cGACaGGCCaGGA--GCCGCUCGACCGc -3'
miRNA:   3'- -CUGgCUGG-CCUacUGGCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 187189 0.67 0.830837
Target:  5'- cGCCcaGCCGGAUGACCaGCacccCGACCa- -3'
miRNA:   3'- cUGGc-UGGCCUACUGG-CGa---GCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 186262 0.7 0.697861
Target:  5'- -gUCGACCGGAUcACCGCcUGGCgCGGc -3'
miRNA:   3'- cuGGCUGGCCUAcUGGCGaGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 185760 0.7 0.67872
Target:  5'- aGCCG-CCGGcgcGGCCGCccgucacacgUCGGCCGGc -3'
miRNA:   3'- cUGGCuGGCCua-CUGGCG----------AGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 184842 0.71 0.6488
Target:  5'- cACCGcgcagcgauacguGCCGGAcGGCCGUUCGAaCGGg -3'
miRNA:   3'- cUGGC-------------UGGCCUaCUGGCGAGCUgGCC- -5'
10880 3' -58.7 NC_002794.1 + 183581 0.68 0.788495
Target:  5'- gGGCCuuuaauacgguggGGgCGGAggggGGCCGCgcgCGGCCGGc -3'
miRNA:   3'- -CUGG-------------CUgGCCUa---CUGGCGa--GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 181537 0.7 0.697861
Target:  5'- cGCCG-CCGGcgGGCCGgcgcuCUCGgucGCCGGg -3'
miRNA:   3'- cUGGCuGGCCuaCUGGC-----GAGC---UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 180369 0.66 0.900377
Target:  5'- cGACCGgcgcgaggacgcuGCCGGccaGCUGCUCGAaCGGg -3'
miRNA:   3'- -CUGGC-------------UGGCCuacUGGCGAGCUgGCC- -5'
10880 3' -58.7 NC_002794.1 + 178787 0.66 0.888504
Target:  5'- cGAagGGCgGGAaGGCgGCUCGGcCCGGg -3'
miRNA:   3'- -CUggCUGgCCUaCUGgCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 178267 0.72 0.590743
Target:  5'- gGGCUGACCGGAgacgGggucggucgagcgACgGCUCGACgCGGg -3'
miRNA:   3'- -CUGGCUGGCCUa---C-------------UGgCGAGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 176609 0.66 0.900981
Target:  5'- cGGCCGGCaCGGccauccucGUGG-CGUUCGGcCCGGa -3'
miRNA:   3'- -CUGGCUG-GCC--------UACUgGCGAGCU-GGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.