miRNA display CGI


Results 21 - 40 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 166760 0.66 0.894845
Target:  5'- cGGCUGACgcguauUGGAUGGCCG-UCGACgGa -3'
miRNA:   3'- -CUGGCUG------GCCUACUGGCgAGCUGgCc -5'
10880 3' -58.7 NC_002794.1 + 159267 0.67 0.846342
Target:  5'- aGAUCGACguuGUGACUGaCUCGACCGa -3'
miRNA:   3'- -CUGGCUGgccUACUGGC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 156398 0.72 0.601353
Target:  5'- aGAgCGGCCGGcgccgcGGCCGCggccaCGGCCGGc -3'
miRNA:   3'- -CUgGCUGGCCua----CUGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 155890 0.67 0.838674
Target:  5'- aGACacgaGAUCGGAauaGACCgGCUCGACgugCGGa -3'
miRNA:   3'- -CUGg---CUGGCCUa--CUGG-CGAGCUG---GCC- -5'
10880 3' -58.7 NC_002794.1 + 154257 0.67 0.853836
Target:  5'- aGACUugGACCGGGgucuggucccGACCGC-CGGCgCGGc -3'
miRNA:   3'- -CUGG--CUGGCCUa---------CUGGCGaGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 153668 0.67 0.830837
Target:  5'- cGGCCG-CCGGuuGUGAggcucgaCGCgCGACCGGc -3'
miRNA:   3'- -CUGGCuGGCC--UACUg------GCGaGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 151647 0.71 0.620703
Target:  5'- cGCCGGCCGGcacuUGGCuCGC-CG-CCGGg -3'
miRNA:   3'- cUGGCUGGCCu---ACUG-GCGaGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 150981 0.66 0.900981
Target:  5'- cGGCCGGuCUGGAcGACgaGCUCGcCCGc -3'
miRNA:   3'- -CUGGCU-GGCCUaCUGg-CGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 150537 0.7 0.707362
Target:  5'- aGCCgGGCCGGcgccAUGGCCGuCUCGgcGCUGGa -3'
miRNA:   3'- cUGG-CUGGCC----UACUGGC-GAGC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 149967 0.66 0.881959
Target:  5'- uGGCCGACCugccGcgGACCGg-CGGCCGc -3'
miRNA:   3'- -CUGGCUGGc---CuaCUGGCgaGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 149665 0.73 0.54398
Target:  5'- aGGCCGAgCGGG-GGCgcgucgCGCUCGACUGGc -3'
miRNA:   3'- -CUGGCUgGCCUaCUG------GCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 149215 0.69 0.744715
Target:  5'- cGGCUGGCCGGAaGcgaggcgccGCCGCcgUCG-CCGGg -3'
miRNA:   3'- -CUGGCUGGCCUaC---------UGGCG--AGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 149009 0.7 0.67872
Target:  5'- cGACUGuuucaACCGGGUcauccucACCGaCUCGGCCGGa -3'
miRNA:   3'- -CUGGC-----UGGCCUAc------UGGC-GAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 148981 0.66 0.868278
Target:  5'- cGGCCGACCuc-UGGgUGCUCGGUCGGa -3'
miRNA:   3'- -CUGGCUGGccuACUgGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 148805 0.69 0.762892
Target:  5'- cGCCGAgcacgcggagauCUGGA-GACUGCcccgCGACCGGg -3'
miRNA:   3'- cUGGCU------------GGCCUaCUGGCGa---GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 148667 0.67 0.830837
Target:  5'- cGACCGAggagCGGAUGuacgugcucaGCCGCUCGuggaacacuuuCCGGu -3'
miRNA:   3'- -CUGGCUg---GCCUAC----------UGGCGAGCu----------GGCC- -5'
10880 3' -58.7 NC_002794.1 + 146922 0.73 0.515942
Target:  5'- gGAUCGGCCGGAcggaGAgCGCUCGGuCUGGc -3'
miRNA:   3'- -CUGGCUGGCCUa---CUgGCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 146361 0.68 0.797938
Target:  5'- cGGCCGcCCGGGUagccGuCCGCUCGuCCa- -3'
miRNA:   3'- -CUGGCuGGCCUA----CuGGCGAGCuGGcc -5'
10880 3' -58.7 NC_002794.1 + 146002 0.7 0.675835
Target:  5'- cGGCCG-CCGGGgccgGAgacgccgucccaguCCGCUCGAucuCCGGg -3'
miRNA:   3'- -CUGGCuGGCCUa---CU--------------GGCGAGCU---GGCC- -5'
10880 3' -58.7 NC_002794.1 + 145794 0.66 0.881959
Target:  5'- cGGCCGGCuCGGAcGACgaCGC-CGccGCCGGc -3'
miRNA:   3'- -CUGGCUG-GCCUaCUG--GCGaGC--UGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.