miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 143752 0.66 0.868278
Target:  5'- cGCCG-CCGGggGGcuCCGCUCGucgUCGGu -3'
miRNA:   3'- cUGGCuGGCCuaCU--GGCGAGCu--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 143272 0.68 0.780654
Target:  5'- -cCCGGcCCGGcgccGGCCGCUCGGggUCGGg -3'
miRNA:   3'- cuGGCU-GGCCua--CUGGCGAGCU--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 141636 0.68 0.771829
Target:  5'- cGACgggaaGGCCGGcGUGGCCGCggCcGCCGGc -3'
miRNA:   3'- -CUGg----CUGGCC-UACUGGCGa-GcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140690 0.66 0.875216
Target:  5'- gGugCGA-CGGAccGGCCGCcgCGACcCGGg -3'
miRNA:   3'- -CugGCUgGCCUa-CUGGCGa-GCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 140407 0.67 0.837898
Target:  5'- -uCCGACguuaucuCGGGUGGCCGCgaCGuacaACCGGa -3'
miRNA:   3'- cuGGCUG-------GCCUACUGGCGa-GC----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140271 0.66 0.874531
Target:  5'- aGCUcGCCGcGAUGACCGCguuuuugggccucUCGGCCa- -3'
miRNA:   3'- cUGGcUGGC-CUACUGGCG-------------AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 140000 0.68 0.780654
Target:  5'- gGACgGugCGGGUGgagGCCGCggaGGCCGcGg -3'
miRNA:   3'- -CUGgCugGCCUAC---UGGCGag-CUGGC-C- -5'
10880 3' -58.7 NC_002794.1 + 137152 0.66 0.881959
Target:  5'- cGGCCGGCCGcccucGGUcccGGCCGCUCGcucGCCc- -3'
miRNA:   3'- -CUGGCUGGC-----CUA---CUGGCGAGC---UGGcc -5'
10880 3' -58.7 NC_002794.1 + 135548 0.67 0.838674
Target:  5'- cGACCGACCGaauagGGgCGCa-GGCCGGc -3'
miRNA:   3'- -CUGGCUGGCcua--CUgGCGagCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 134600 0.72 0.591706
Target:  5'- gGGCCGAcuCCGGAucccgccgaguUGACCGCcaUCGccuGCCGGu -3'
miRNA:   3'- -CUGGCU--GGCCU-----------ACUGGCG--AGC---UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 134172 0.67 0.838674
Target:  5'- uGGCCG-CgCGGAUGGCCacCUCGuAUCGGc -3'
miRNA:   3'- -CUGGCuG-GCCUACUGGc-GAGC-UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 133510 0.66 0.868278
Target:  5'- -uCCGACgGcGAccUGGCCGUUgaguuggcCGACCGGg -3'
miRNA:   3'- cuGGCUGgC-CU--ACUGGCGA--------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 133161 0.66 0.875216
Target:  5'- cGCCGACgacGUGACuCGCUCGAcgauCCGGu -3'
miRNA:   3'- cUGGCUGgccUACUG-GCGAGCU----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 132896 0.67 0.853836
Target:  5'- cGCCGcCCGGAc--CUGCggCGGCCGGu -3'
miRNA:   3'- cUGGCuGGCCUacuGGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 132573 0.77 0.326889
Target:  5'- aGCCagGACCGGGUgGGCCGCUUcACCGGg -3'
miRNA:   3'- cUGG--CUGGCCUA-CUGGCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 131787 0.71 0.630392
Target:  5'- cGACCGACgGGAcuGCCGggCGACCa- -3'
miRNA:   3'- -CUGGCUGgCCUacUGGCgaGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 129169 0.75 0.410748
Target:  5'- --gCGGCC-GAUGGCCGUUCGAUCGGc -3'
miRNA:   3'- cugGCUGGcCUACUGGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 128422 0.69 0.762892
Target:  5'- aGACCgggauGACCGGGUGGcCCGCgcgcacggCGccuCCGGa -3'
miRNA:   3'- -CUGG-----CUGGCCUACU-GGCGa-------GCu--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 128391 0.7 0.707362
Target:  5'- cGCCGAucCCGGAUGGgCGagggGACCGGg -3'
miRNA:   3'- cUGGCU--GGCCUACUgGCgag-CUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 127997 0.66 0.894845
Target:  5'- -uCUGGgCGGAcGACCGUcgUCGGCCGc -3'
miRNA:   3'- cuGGCUgGCCUaCUGGCG--AGCUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.