miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 127745 0.67 0.822839
Target:  5'- --aCGGCCGGAgGACCGUUggaGACCa- -3'
miRNA:   3'- cugGCUGGCCUaCUGGCGAg--CUGGcc -5'
10880 3' -58.7 NC_002794.1 + 127089 0.74 0.453032
Target:  5'- gGACCGGCUGGAgagcGGCgGCUCG-CCGa -3'
miRNA:   3'- -CUGGCUGGCCUa---CUGgCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 126096 0.67 0.846342
Target:  5'- cGACCGACUGGcuuccGGCCcugggcgccgcGCUCGucugcGCCGGu -3'
miRNA:   3'- -CUGGCUGGCCua---CUGG-----------CGAGC-----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 124492 0.74 0.444384
Target:  5'- gGACCG-CCGGAUGGagUCGCgUCGGCCGc -3'
miRNA:   3'- -CUGGCuGGCCUACU--GGCG-AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 123263 0.68 0.771829
Target:  5'- cGCCGGCUGGuccgGGCCGCggUCGuCgCGGg -3'
miRNA:   3'- cUGGCUGGCCua--CUGGCG--AGCuG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 121804 0.68 0.809721
Target:  5'- cGACCGGCCGGcgccuGCCGCUgcaggaucgcuacgaCGGCCa- -3'
miRNA:   3'- -CUGGCUGGCCuac--UGGCGA---------------GCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 121394 0.7 0.67872
Target:  5'- gGACCGcgGCCGGcgccggGACCGCgacCGucGCCGGg -3'
miRNA:   3'- -CUGGC--UGGCCua----CUGGCGa--GC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 120441 0.67 0.830837
Target:  5'- aGCCGGCgUGGAacGCCGCgUCGGCCuGGc -3'
miRNA:   3'- cUGGCUG-GCCUacUGGCG-AGCUGG-CC- -5'
10880 3' -58.7 NC_002794.1 + 120129 0.66 0.894845
Target:  5'- cGACggCGACCGGGgacgGGCCGgU--GCCGGa -3'
miRNA:   3'- -CUG--GCUGGCCUa---CUGGCgAgcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 120072 0.7 0.67872
Target:  5'- aGGCCGACgCGGcgGUGGCgGCgaCGACCGu -3'
miRNA:   3'- -CUGGCUG-GCC--UACUGgCGa-GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 116062 0.7 0.707362
Target:  5'- aGCgCGACUGGGgucgcgGAgCGCUCGGCgCGGc -3'
miRNA:   3'- cUG-GCUGGCCUa-----CUgGCGAGCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 115935 0.67 0.861149
Target:  5'- cGGCgGGCCGGcccGCCGCgugUCG-CCGGg -3'
miRNA:   3'- -CUGgCUGGCCuacUGGCG---AGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 112340 0.7 0.697861
Target:  5'- cGCCGGCCGGcgGcGCCGg-CGGCgGGg -3'
miRNA:   3'- cUGGCUGGCCuaC-UGGCgaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 111615 0.68 0.797938
Target:  5'- aGGCCGGCgGGGccGCCGCggcCGccGCCGGu -3'
miRNA:   3'- -CUGGCUGgCCUacUGGCGa--GC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 111261 0.66 0.875216
Target:  5'- cGGCCGGCaGGAUgcgGACCGC-CaGCUGGu -3'
miRNA:   3'- -CUGGCUGgCCUA---CUGGCGaGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 111104 0.67 0.83712
Target:  5'- -cCCGGCgGGAccgUGGCCGUcgacggcgccggCGGCCGGu -3'
miRNA:   3'- cuGGCUGgCCU---ACUGGCGa-----------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 108460 0.71 0.659441
Target:  5'- cGGCCcGCCGGcacgGGCCGaggggCGACCGGc -3'
miRNA:   3'- -CUGGcUGGCCua--CUGGCga---GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 108139 0.69 0.762892
Target:  5'- cGCCGGCUGGAUucGCCGC-CGggagcGCCGGc -3'
miRNA:   3'- cUGGCUGGCCUAc-UGGCGaGC-----UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 107763 0.69 0.73549
Target:  5'- cGCUGGCUGGA--GCgCGCUCGcCCGGc -3'
miRNA:   3'- cUGGCUGGCCUacUG-GCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 106983 0.66 0.881959
Target:  5'- cGGCCGGCaCGGcgGUGGCgGCgcuGGCCGa -3'
miRNA:   3'- -CUGGCUG-GCC--UACUGgCGag-CUGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.