miRNA display CGI


Results 41 - 60 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 77003 0.66 0.900981
Target:  5'- cACCGucACCGGGauGCCGCcggcgcaccUCGACCGc -3'
miRNA:   3'- cUGGC--UGGCCUacUGGCG---------AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 180369 0.66 0.900377
Target:  5'- cGACCGgcgcgaggacgcuGCCGGccaGCUGCUCGAaCGGg -3'
miRNA:   3'- -CUGGC-------------UGGCCuacUGGCGAGCUgGCC- -5'
10880 3' -58.7 NC_002794.1 + 73574 0.66 0.900981
Target:  5'- cACCGACUGGAUcGacgccaaggcGCCGUaCGACgGGu -3'
miRNA:   3'- cUGGCUGGCCUA-C----------UGGCGaGCUGgCC- -5'
10880 3' -58.7 NC_002794.1 + 176609 0.66 0.900981
Target:  5'- cGGCCGGCaCGGccauccucGUGG-CGUUCGGcCCGGa -3'
miRNA:   3'- -CUGGCUG-GCC--------UACUgGCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 75263 0.66 0.900981
Target:  5'- aACCGAcCCGGcuccACCGCccaccCGGCCGGc -3'
miRNA:   3'- cUGGCU-GGCCuac-UGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 145794 0.66 0.881959
Target:  5'- cGGCCGGCuCGGAcGACgaCGC-CGccGCCGGc -3'
miRNA:   3'- -CUGGCUG-GCCUaCUG--GCGaGC--UGGCC- -5'
10880 3' -58.7 NC_002794.1 + 178787 0.66 0.888504
Target:  5'- cGAagGGCgGGAaGGCgGCUCGGcCCGGg -3'
miRNA:   3'- -CUggCUGgCCUaCUGgCGAGCU-GGCC- -5'
10880 3' -58.7 NC_002794.1 + 94289 0.66 0.875216
Target:  5'- -cCCGAgCGGggGGCgGCUCGggcgcGCCGa -3'
miRNA:   3'- cuGGCUgGCCuaCUGgCGAGC-----UGGCc -5'
10880 3' -58.7 NC_002794.1 + 111261 0.66 0.875216
Target:  5'- cGGCCGGCaGGAUgcgGACCGC-CaGCUGGu -3'
miRNA:   3'- -CUGGCUGgCCUA---CUGGCGaGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140690 0.66 0.875216
Target:  5'- gGugCGA-CGGAccGGCCGCcgCGACcCGGg -3'
miRNA:   3'- -CugGCUgGCCUa-CUGGCGa-GCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 191009 0.66 0.875216
Target:  5'- cGAUCGGCCGuucGAUcGGCaCGUUCaGCCGGa -3'
miRNA:   3'- -CUGGCUGGC---CUA-CUG-GCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 133161 0.66 0.875216
Target:  5'- cGCCGACgacGUGACuCGCUCGAcgauCCGGu -3'
miRNA:   3'- cUGGCUGgccUACUG-GCGAGCU----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 21879 0.66 0.881959
Target:  5'- aGGCCGGCCgcgGGGUGuCCGCggccugCG-UCGGu -3'
miRNA:   3'- -CUGGCUGG---CCUACuGGCGa-----GCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 18620 0.66 0.881294
Target:  5'- cACCGGCCGccccuccGAcGcCCGCUCcGCCGGc -3'
miRNA:   3'- cUGGCUGGC-------CUaCuGGCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 95761 0.66 0.881959
Target:  5'- cGCgGGgCGGc-GGCCGCgacggCGGCCGGg -3'
miRNA:   3'- cUGgCUgGCCuaCUGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 106983 0.66 0.881959
Target:  5'- cGGCCGGCaCGGcgGUGGCgGCgcuGGCCGa -3'
miRNA:   3'- -CUGGCUG-GCC--UACUGgCGag-CUGGCc -5'
10880 3' -58.7 NC_002794.1 + 82858 0.66 0.881959
Target:  5'- aGCgCGACCGc--GACCGCgaccgCGACCGu -3'
miRNA:   3'- cUG-GCUGGCcuaCUGGCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 137152 0.66 0.881959
Target:  5'- cGGCCGGCCGcccucGGUcccGGCCGCUCGcucGCCc- -3'
miRNA:   3'- -CUGGCUGGC-----CUA---CUGGCGAGC---UGGcc -5'
10880 3' -58.7 NC_002794.1 + 149967 0.66 0.881959
Target:  5'- uGGCCGACCugccGcgGACCGg-CGGCCGc -3'
miRNA:   3'- -CUGGCUGGc---CuaCUGGCgaGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 195580 0.66 0.888504
Target:  5'- cGACCGACCGccgGACCGgC-CGACgCGc -3'
miRNA:   3'- -CUGGCUGGCcuaCUGGC-GaGCUG-GCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.