miRNA display CGI


Results 61 - 80 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 82858 0.66 0.881959
Target:  5'- aGCgCGACCGc--GACCGCgaccgCGACCGu -3'
miRNA:   3'- cUG-GCUGGCcuaCUGGCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 106983 0.66 0.881959
Target:  5'- cGGCCGGCaCGGcgGUGGCgGCgcuGGCCGa -3'
miRNA:   3'- -CUGGCUG-GCC--UACUGgCGag-CUGGCc -5'
10880 3' -58.7 NC_002794.1 + 148981 0.66 0.868278
Target:  5'- cGGCCGACCuc-UGGgUGCUCGGUCGGa -3'
miRNA:   3'- -CUGGCUGGccuACUgGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 143752 0.66 0.868278
Target:  5'- cGCCG-CCGGggGGcuCCGCUCGucgUCGGu -3'
miRNA:   3'- cUGGCuGGCCuaCU--GGCGAGCu--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 99853 0.66 0.868278
Target:  5'- cGACCaGGCCGa--GACCGUcgugUCGGCCGa -3'
miRNA:   3'- -CUGG-CUGGCcuaCUGGCG----AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 133510 0.66 0.868278
Target:  5'- -uCCGACgGcGAccUGGCCGUUgaguuggcCGACCGGg -3'
miRNA:   3'- cuGGCUGgC-CU--ACUGGCGA--------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 77794 0.66 0.868278
Target:  5'- aGAUCGugcaGCCGGAgcaACCGCUCGcCCa- -3'
miRNA:   3'- -CUGGC----UGGCCUac-UGGCGAGCuGGcc -5'
10880 3' -58.7 NC_002794.1 + 81408 0.66 0.868278
Target:  5'- -cCCGGCuCGGGa-GCUGCUCGcCCGGc -3'
miRNA:   3'- cuGGCUG-GCCUacUGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 71865 0.67 0.861149
Target:  5'- cGCCGGCCaGAcu-CCGCUCGACgucgUGGa -3'
miRNA:   3'- cUGGCUGGcCUacuGGCGAGCUG----GCC- -5'
10880 3' -58.7 NC_002794.1 + 80433 0.66 0.868278
Target:  5'- gGGCCGccGCCGGc-GGCCGC-CGGCCc- -3'
miRNA:   3'- -CUGGC--UGGCCuaCUGGCGaGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 66410 0.66 0.868278
Target:  5'- cGCCGACCGugcGAaGACgGCgguugCGACCGu -3'
miRNA:   3'- cUGGCUGGC---CUaCUGgCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 140271 0.66 0.874531
Target:  5'- aGCUcGCCGcGAUGACCGCguuuuugggccucUCGGCCa- -3'
miRNA:   3'- cUGGcUGGC-CUACUGGCG-------------AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 95761 0.66 0.881959
Target:  5'- cGCgGGgCGGc-GGCCGCgacggCGGCCGGg -3'
miRNA:   3'- cUGgCUgGCCuaCUGGCGa----GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 18620 0.66 0.881294
Target:  5'- cACCGGCCGccccuccGAcGcCCGCUCcGCCGGc -3'
miRNA:   3'- cUGGCUGGC-------CUaCuGGCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 21879 0.66 0.881959
Target:  5'- aGGCCGGCCgcgGGGUGuCCGCggccugCG-UCGGu -3'
miRNA:   3'- -CUGGCUGG---CCUACuGGCGa-----GCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 133161 0.66 0.875216
Target:  5'- cGCCGACgacGUGACuCGCUCGAcgauCCGGu -3'
miRNA:   3'- cUGGCUGgccUACUG-GCGAGCU----GGCC- -5'
10880 3' -58.7 NC_002794.1 + 191009 0.66 0.875216
Target:  5'- cGAUCGGCCGuucGAUcGGCaCGUUCaGCCGGa -3'
miRNA:   3'- -CUGGCUGGC---CUA-CUG-GCGAGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140690 0.66 0.875216
Target:  5'- gGugCGA-CGGAccGGCCGCcgCGACcCGGg -3'
miRNA:   3'- -CugGCUgGCCUa-CUGGCGa-GCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 111261 0.66 0.875216
Target:  5'- cGGCCGGCaGGAUgcgGACCGC-CaGCUGGu -3'
miRNA:   3'- -CUGGCUGgCCUA---CUGGCGaGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 94289 0.66 0.875216
Target:  5'- -cCCGAgCGGggGGCgGCUCGggcgcGCCGa -3'
miRNA:   3'- cuGGCUgGCCuaCUGgCGAGC-----UGGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.