miRNA display CGI


Results 81 - 100 of 182 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 3' -58.7 NC_002794.1 + 115935 0.67 0.861149
Target:  5'- cGGCgGGCCGGcccGCCGCgugUCG-CCGGg -3'
miRNA:   3'- -CUGgCUGGCCuacUGGCG---AGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 14782 0.67 0.861149
Target:  5'- aGGCCGgcgagGCCGGcGUGACCGC--GACCa- -3'
miRNA:   3'- -CUGGC-----UGGCC-UACUGGCGagCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 43250 0.67 0.858975
Target:  5'- cGGCCGgaacGCCGGGUGGuagcacucgcagauCCGCU--GCCGGc -3'
miRNA:   3'- -CUGGC----UGGCCUACU--------------GGCGAgcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 132896 0.67 0.853836
Target:  5'- cGCCGcCCGGAc--CUGCggCGGCCGGu -3'
miRNA:   3'- cUGGCuGGCCUacuGGCGa-GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 189960 0.67 0.853836
Target:  5'- gGACCGACggaCGGGccGcCCGCUCGcCCGa -3'
miRNA:   3'- -CUGGCUG---GCCUa-CuGGCGAGCuGGCc -5'
10880 3' -58.7 NC_002794.1 + 44244 0.67 0.853836
Target:  5'- cGGgCGGCuCGGugccgGGCgGCUCGGCCGc -3'
miRNA:   3'- -CUgGCUG-GCCua---CUGgCGAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 67932 0.67 0.853836
Target:  5'- cGAgCGACgGGgcGAUgGcCUCGACCGa -3'
miRNA:   3'- -CUgGCUGgCCuaCUGgC-GAGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 80433 0.66 0.868278
Target:  5'- gGGCCGccGCCGGc-GGCCGC-CGGCCc- -3'
miRNA:   3'- -CUGGC--UGGCCuaCUGGCGaGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 71865 0.67 0.861149
Target:  5'- cGCCGGCCaGAcu-CCGCUCGACgucgUGGa -3'
miRNA:   3'- cUGGCUGGcCUacuGGCGAGCUG----GCC- -5'
10880 3' -58.7 NC_002794.1 + 81408 0.66 0.868278
Target:  5'- -cCCGGCuCGGGa-GCUGCUCGcCCGGc -3'
miRNA:   3'- cuGGCUG-GCCUacUGGCGAGCuGGCC- -5'
10880 3' -58.7 NC_002794.1 + 140690 0.66 0.875216
Target:  5'- gGugCGA-CGGAccGGCCGCcgCGACcCGGg -3'
miRNA:   3'- -CugGCUgGCCUa-CUGGCGa-GCUG-GCC- -5'
10880 3' -58.7 NC_002794.1 + 111261 0.66 0.875216
Target:  5'- cGGCCGGCaGGAUgcgGACCGC-CaGCUGGu -3'
miRNA:   3'- -CUGGCUGgCCUA---CUGGCGaGcUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 94289 0.66 0.875216
Target:  5'- -cCCGAgCGGggGGCgGCUCGggcgcGCCGa -3'
miRNA:   3'- cuGGCUgGCCuaCUGgCGAGC-----UGGCc -5'
10880 3' -58.7 NC_002794.1 + 140271 0.66 0.874531
Target:  5'- aGCUcGCCGcGAUGACCGCguuuuugggccucUCGGCCa- -3'
miRNA:   3'- cUGGcUGGC-CUACUGGCG-------------AGCUGGcc -5'
10880 3' -58.7 NC_002794.1 + 66410 0.66 0.868278
Target:  5'- cGCCGACCGugcGAaGACgGCgguugCGACCGu -3'
miRNA:   3'- cUGGCUGGC---CUaCUGgCGa----GCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 148981 0.66 0.868278
Target:  5'- cGGCCGACCuc-UGGgUGCUCGGUCGGa -3'
miRNA:   3'- -CUGGCUGGccuACUgGCGAGCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 143752 0.66 0.868278
Target:  5'- cGCCG-CCGGggGGcuCCGCUCGucgUCGGu -3'
miRNA:   3'- cUGGCuGGCCuaCU--GGCGAGCu--GGCC- -5'
10880 3' -58.7 NC_002794.1 + 99853 0.66 0.868278
Target:  5'- cGACCaGGCCGa--GACCGUcgugUCGGCCGa -3'
miRNA:   3'- -CUGG-CUGGCcuaCUGGCG----AGCUGGCc -5'
10880 3' -58.7 NC_002794.1 + 133510 0.66 0.868278
Target:  5'- -uCCGACgGcGAccUGGCCGUUgaguuggcCGACCGGg -3'
miRNA:   3'- cuGGCUGgC-CU--ACUGGCGA--------GCUGGCC- -5'
10880 3' -58.7 NC_002794.1 + 77794 0.66 0.868278
Target:  5'- aGAUCGugcaGCCGGAgcaACCGCUCGcCCa- -3'
miRNA:   3'- -CUGGC----UGGCCUac-UGGCGAGCuGGcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.