Results 1 - 20 of 182 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10880 | 3' | -58.7 | NC_002794.1 | + | 22793 | 0.79 | 0.256406 |
Target: 5'- cGACCGACCGaccGACCGCUCGACUc- -3' miRNA: 3'- -CUGGCUGGCcuaCUGGCGAGCUGGcc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 893 | 0.66 | 0.894845 |
Target: 5'- cGCgGGCCGGGUGccaacGCCGCUCc-CCGc -3' miRNA: 3'- cUGgCUGGCCUAC-----UGGCGAGcuGGCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 20282 | 0.66 | 0.888504 |
Target: 5'- cGACCGaaccGCCGGAaGACCaagcgcucugGCUCGAgaUGGa -3' miRNA: 3'- -CUGGC----UGGCCUaCUGG----------CGAGCUg-GCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 145794 | 0.66 | 0.881959 |
Target: 5'- cGGCCGGCuCGGAcGACgaCGC-CGccGCCGGc -3' miRNA: 3'- -CUGGCUG-GCCUaCUG--GCGaGC--UGGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 178787 | 0.66 | 0.888504 |
Target: 5'- cGAagGGCgGGAaGGCgGCUCGGcCCGGg -3' miRNA: 3'- -CUggCUGgCCUaCUGgCGAGCU-GGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 195580 | 0.66 | 0.888504 |
Target: 5'- cGACCGACCGccgGACCGgC-CGACgCGc -3' miRNA: 3'- -CUGGCUGGCcuaCUGGC-GaGCUG-GCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 149967 | 0.66 | 0.881959 |
Target: 5'- uGGCCGACCugccGcgGACCGg-CGGCCGc -3' miRNA: 3'- -CUGGCUGGc---CuaCUGGCgaGCUGGCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 137152 | 0.66 | 0.881959 |
Target: 5'- cGGCCGGCCGcccucGGUcccGGCCGCUCGcucGCCc- -3' miRNA: 3'- -CUGGCUGGC-----CUA---CUGGCGAGC---UGGcc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 82858 | 0.66 | 0.881959 |
Target: 5'- aGCgCGACCGc--GACCGCgaccgCGACCGu -3' miRNA: 3'- cUG-GCUGGCcuaCUGGCGa----GCUGGCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 10963 | 0.66 | 0.894845 |
Target: 5'- gGGCCGGCCGagacguccGAUGcCUGCUCcgaGGCCGc -3' miRNA: 3'- -CUGGCUGGC--------CUACuGGCGAG---CUGGCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 78685 | 0.66 | 0.894845 |
Target: 5'- cGCCGGCCGcAUGugCGgC-CGACaCGGc -3' miRNA: 3'- cUGGCUGGCcUACugGC-GaGCUG-GCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 120129 | 0.66 | 0.894845 |
Target: 5'- cGACggCGACCGGGgacgGGCCGgU--GCCGGa -3' miRNA: 3'- -CUG--GCUGGCCUa---CUGGCgAgcUGGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 75263 | 0.66 | 0.900981 |
Target: 5'- aACCGAcCCGGcuccACCGCccaccCGGCCGGc -3' miRNA: 3'- cUGGCU-GGCCuac-UGGCGa----GCUGGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 176609 | 0.66 | 0.900981 |
Target: 5'- cGGCCGGCaCGGccauccucGUGG-CGUUCGGcCCGGa -3' miRNA: 3'- -CUGGCUG-GCC--------UACUgGCGAGCU-GGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 73574 | 0.66 | 0.900981 |
Target: 5'- cACCGACUGGAUcGacgccaaggcGCCGUaCGACgGGu -3' miRNA: 3'- cUGGCUGGCCUA-C----------UGGCGaGCUGgCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 180369 | 0.66 | 0.900377 |
Target: 5'- cGACCGgcgcgaggacgcuGCCGGccaGCUGCUCGAaCGGg -3' miRNA: 3'- -CUGGC-------------UGGCCuacUGGCGAGCUgGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 77003 | 0.66 | 0.900981 |
Target: 5'- cACCGucACCGGGauGCCGCcggcgcaccUCGACCGc -3' miRNA: 3'- cUGGC--UGGCCUacUGGCG---------AGCUGGCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 83839 | 0.66 | 0.894845 |
Target: 5'- cGGCCGAUCGG----UCGC-CGAUCGGg -3' miRNA: 3'- -CUGGCUGGCCuacuGGCGaGCUGGCC- -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 127997 | 0.66 | 0.894845 |
Target: 5'- -uCUGGgCGGAcGACCGUcgUCGGCCGc -3' miRNA: 3'- cuGGCUgGCCUaCUGGCG--AGCUGGCc -5' |
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10880 | 3' | -58.7 | NC_002794.1 | + | 166760 | 0.66 | 0.894845 |
Target: 5'- cGGCUGACgcguauUGGAUGGCCG-UCGACgGa -3' miRNA: 3'- -CUGGCUG------GCCUACUGGCgAGCUGgCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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