miRNA display CGI


Results 1 - 20 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10880 5' -55.5 NC_002794.1 + 101503 0.66 0.96142
Target:  5'- gGUCCGAGCgGUGCGGcacACGCcgGCGGggugcccggcGCCAc -3'
miRNA:   3'- -CAGGCUUG-CGUGCC---UGCG--UGCU----------UGGU- -5'
10880 5' -55.5 NC_002794.1 + 140676 0.66 0.96142
Target:  5'- -gUCGGGCGCAgguCGG-UGCgACGGACCGg -3'
miRNA:   3'- caGGCUUGCGU---GCCuGCG-UGCUUGGU- -5'
10880 5' -55.5 NC_002794.1 + 117850 0.66 0.957889
Target:  5'- -aCgGAGCGCgACGGGgGCugGcgcGCCAg -3'
miRNA:   3'- caGgCUUGCG-UGCCUgCGugCu--UGGU- -5'
10880 5' -55.5 NC_002794.1 + 15269 0.66 0.957889
Target:  5'- cGUCggCGAGcCGCGCGGcucccucCGCGCGAGCg- -3'
miRNA:   3'- -CAG--GCUU-GCGUGCCu------GCGUGCUUGgu -5'
10880 5' -55.5 NC_002794.1 + 56903 0.66 0.957889
Target:  5'- -gCCGcGCGUggccACGGGCGC-CGGGCUg -3'
miRNA:   3'- caGGCuUGCG----UGCCUGCGuGCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 86236 0.66 0.957889
Target:  5'- -aCCGAGCcgGgACGGAUGCuccggcuCGAGCCc -3'
miRNA:   3'- caGGCUUG--CgUGCCUGCGu------GCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 86428 0.66 0.957889
Target:  5'- -aCCGAGCcgGgACGGAUGCuccggcuCGAGCCc -3'
miRNA:   3'- caGGCUUG--CgUGCCUGCGu------GCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 86596 0.66 0.957889
Target:  5'- -aCCGAGCcgGgACGGAUGCuccggcuCGAGCCc -3'
miRNA:   3'- caGGCUUG--CgUGCCUGCGu------GCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 52773 0.66 0.957524
Target:  5'- -cCCGGGC-CGCGGgaucgugACGCuCGAGCCGc -3'
miRNA:   3'- caGGCUUGcGUGCC-------UGCGuGCUUGGU- -5'
10880 5' -55.5 NC_002794.1 + 82612 0.66 0.954143
Target:  5'- -gCCGAAguCACGGAacUGCGCGAACUc -3'
miRNA:   3'- caGGCUUgcGUGCCU--GCGUGCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 153888 0.66 0.954143
Target:  5'- cGUCCacGCGCAgGGAaacgUGCGCGAccuguACCGa -3'
miRNA:   3'- -CAGGcuUGCGUgCCU----GCGUGCU-----UGGU- -5'
10880 5' -55.5 NC_002794.1 + 94965 0.66 0.954143
Target:  5'- cGUCCugGAGcCGaCGCGGGgGCugGAGCUc -3'
miRNA:   3'- -CAGG--CUU-GC-GUGCCUgCGugCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 22183 0.66 0.954143
Target:  5'- --aCGGACgGC-CGGACuCACGAACCc -3'
miRNA:   3'- cagGCUUG-CGuGCCUGcGUGCUUGGu -5'
10880 5' -55.5 NC_002794.1 + 40104 0.66 0.954143
Target:  5'- aUCUuGACGaCGgGGGCGCGCGAgagcggagaGCCAc -3'
miRNA:   3'- cAGGcUUGC-GUgCCUGCGUGCU---------UGGU- -5'
10880 5' -55.5 NC_002794.1 + 91245 0.66 0.954143
Target:  5'- cGUCgGGcuGCGCucGCGGACGCcguucgUGGACCGg -3'
miRNA:   3'- -CAGgCU--UGCG--UGCCUGCGu-----GCUUGGU- -5'
10880 5' -55.5 NC_002794.1 + 93757 0.66 0.954143
Target:  5'- cUUCG-ACGCcgaccucuuGCGGACGCGCGuGCUg -3'
miRNA:   3'- cAGGCuUGCG---------UGCCUGCGUGCuUGGu -5'
10880 5' -55.5 NC_002794.1 + 194679 0.66 0.954143
Target:  5'- cUCCGggUGCGacacCGuGCccaGCACGAACCAc -3'
miRNA:   3'- cAGGCuuGCGU----GCcUG---CGUGCUUGGU- -5'
10880 5' -55.5 NC_002794.1 + 121489 0.66 0.953756
Target:  5'- gGUUCGGACGCggccuccgccgggGCGacGACGUcCGAACCGg -3'
miRNA:   3'- -CAGGCUUGCG-------------UGC--CUGCGuGCUUGGU- -5'
10880 5' -55.5 NC_002794.1 + 152918 0.66 0.950177
Target:  5'- cGUCCGGAUcgagGCcCGGGCGUACaucGACCu -3'
miRNA:   3'- -CAGGCUUG----CGuGCCUGCGUGc--UUGGu -5'
10880 5' -55.5 NC_002794.1 + 109391 0.66 0.950177
Target:  5'- cUgCGGAUGCugGcGAuCGCGCGAcGCCGg -3'
miRNA:   3'- cAgGCUUGCGugC-CU-GCGUGCU-UGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.