miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 193177 0.66 0.827559
Target:  5'- gCCCGCgccgCGCCagCGUGUCCaGgucgugcgCCACCa- -3'
miRNA:   3'- -GGGCGa---GUGG--GCACAGG-Ca-------GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 13135 0.66 0.827559
Target:  5'- gCUCGCUCGCgCGggucgucgCCGUCCcaugccgcacACCCAc -3'
miRNA:   3'- -GGGCGAGUGgGCaca-----GGCAGG----------UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 29190 0.66 0.827559
Target:  5'- uUCGgUCACCa--GUCCGUCCGUCCGg -3'
miRNA:   3'- gGGCgAGUGGgcaCAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 194402 0.66 0.819545
Target:  5'- gCCCGgUCGuuCGcGUCCG-CCACCg- -3'
miRNA:   3'- -GGGCgAGUggGCaCAGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 92046 0.66 0.819545
Target:  5'- gCCGUgaACCUGUGUCCGgcgugCCGCggCCGg -3'
miRNA:   3'- gGGCGagUGGGCACAGGCa----GGUG--GGU- -5'
10881 3' -60.6 NC_002794.1 + 46255 0.66 0.819545
Target:  5'- gUCCGCUUcCUCGgg-CCGUCgACCCc -3'
miRNA:   3'- -GGGCGAGuGGGCacaGGCAGgUGGGu -5'
10881 3' -60.6 NC_002794.1 + 182056 0.66 0.81138
Target:  5'- uCCUGCgcguagggCGCCUGcGUCCGgucggCCACCg- -3'
miRNA:   3'- -GGGCGa-------GUGGGCaCAGGCa----GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 185948 0.66 0.81138
Target:  5'- gCUCGCggccgCGCCCGUuUCCcuGUCCGuuCCCGg -3'
miRNA:   3'- -GGGCGa----GUGGGCAcAGG--CAGGU--GGGU- -5'
10881 3' -60.6 NC_002794.1 + 181760 0.66 0.81138
Target:  5'- gCCCGCUgACgCCGaUGgcgCCGcgCCGCCg- -3'
miRNA:   3'- -GGGCGAgUG-GGC-ACa--GGCa-GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 147073 0.66 0.81138
Target:  5'- gCCGCgggCGCCCG-GUCCaaggacgaaggcGUCggCGCCCGg -3'
miRNA:   3'- gGGCGa--GUGGGCaCAGG------------CAG--GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 20842 0.66 0.803072
Target:  5'- aCCCGC-CACCUGauccUGcgCuCGUgCCACCCGu -3'
miRNA:   3'- -GGGCGaGUGGGC----ACa-G-GCA-GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 51204 0.66 0.803072
Target:  5'- uUCGCUCGCCCGcGgagcggCCGgCCGgCCGa -3'
miRNA:   3'- gGGCGAGUGGGCaCa-----GGCaGGUgGGU- -5'
10881 3' -60.6 NC_002794.1 + 133261 0.66 0.800552
Target:  5'- gCUCGCUCACCgggagacucgcgUGUgcgcgcggcuaucuGUUCGUCCGCUCAc -3'
miRNA:   3'- -GGGCGAGUGG------------GCA--------------CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 73789 0.66 0.794626
Target:  5'- uCCUGCUgUACCCGUccCCGaCCACCg- -3'
miRNA:   3'- -GGGCGA-GUGGGCAcaGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 101955 0.66 0.794626
Target:  5'- cCCUGCcUGCCCGUGgcggCGUCCAUCa- -3'
miRNA:   3'- -GGGCGaGUGGGCACag--GCAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 148900 0.66 0.78605
Target:  5'- --gGCUCGUCCGcUGUCUGUUCACCUu -3'
miRNA:   3'- gggCGAGUGGGC-ACAGGCAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 28674 0.66 0.78605
Target:  5'- aCCGC-CGCCgGUGgCCGUcgCCGCCg- -3'
miRNA:   3'- gGGCGaGUGGgCACaGGCA--GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 189888 0.66 0.777352
Target:  5'- gCCCGCUCggGCCCGccGUCagcgCCGCCg- -3'
miRNA:   3'- -GGGCGAG--UGGGCa-CAGgca-GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 67140 0.66 0.777352
Target:  5'- -gCGCUCGCggauauacgCCGUGUCCGUgCuguuggccaagaGCCCGa -3'
miRNA:   3'- ggGCGAGUG---------GGCACAGGCAgG------------UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 74009 0.66 0.777352
Target:  5'- cCCaCGCUgCGCCUGUucggCCG-CCACCCc -3'
miRNA:   3'- -GG-GCGA-GUGGGCAca--GGCaGGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.