miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 19362 0.67 0.766763
Target:  5'- gCCCGCccCGCCCGgaucgGgcgggCCGgucaccccucagCCACCCAc -3'
miRNA:   3'- -GGGCGa-GUGGGCa----Ca----GGCa-----------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 188335 0.67 0.759618
Target:  5'- gCCGC-CGCCgGcGgcgCCGUCgCGCCCGu -3'
miRNA:   3'- gGGCGaGUGGgCaCa--GGCAG-GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 26599 0.67 0.759618
Target:  5'- uCCCGCUCGcgccccgccCCCGcGUCCcccaccguccgcGUCCGCgCAc -3'
miRNA:   3'- -GGGCGAGU---------GGGCaCAGG------------CAGGUGgGU- -5'
10881 3' -60.6 NC_002794.1 + 81641 0.67 0.759618
Target:  5'- uCCUGCgCA-CCGUcGUCUGgCCGCCCAu -3'
miRNA:   3'- -GGGCGaGUgGGCA-CAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 153652 0.67 0.759618
Target:  5'- -gCGCUUACgCCGcGUCCGgCCGCCg- -3'
miRNA:   3'- ggGCGAGUG-GGCaCAGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 183511 0.67 0.750597
Target:  5'- cCCCGagacccaugUCGCggCCGUGcgcgccCCGUCCGCCCGg -3'
miRNA:   3'- -GGGCg--------AGUG--GGCACa-----GGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 187085 0.67 0.750597
Target:  5'- gCUGCUCGCCaCGUGgaacagcCCGUCgGuguCCCAg -3'
miRNA:   3'- gGGCGAGUGG-GCACa------GGCAGgU---GGGU- -5'
10881 3' -60.6 NC_002794.1 + 109698 0.68 0.666177
Target:  5'- cCCCGgUCAgCCCGc--CCGcCCGCCCGu -3'
miRNA:   3'- -GGGCgAGU-GGGCacaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 154501 0.68 0.685298
Target:  5'- aCCCGCUC-CCCGUGuauauaUCUcUCC-CCCu -3'
miRNA:   3'- -GGGCGAGuGGGCAC------AGGcAGGuGGGu -5'
10881 3' -60.6 NC_002794.1 + 182771 0.68 0.685298
Target:  5'- gCCGCaCGCCCG-GUCCa-CCACCUg -3'
miRNA:   3'- gGGCGaGUGGGCaCAGGcaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 36737 0.68 0.666177
Target:  5'- gCCCGUUCAcguagaacuCCCG-GUCCuGgcggacggCCACCCAg -3'
miRNA:   3'- -GGGCGAGU---------GGGCaCAGG-Ca-------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 69812 0.68 0.694803
Target:  5'- gCCCGC-CGCCgCGaccggCGUCCGCCCGg -3'
miRNA:   3'- -GGGCGaGUGG-GCacag-GCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131432 0.68 0.704262
Target:  5'- gCCCGUcaucacgaccUCGCCCGUGUuaggcaccgggcCCGUCaucacgaccuCGCCCGu -3'
miRNA:   3'- -GGGCG----------AGUGGGCACA------------GGCAG----------GUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 185308 0.68 0.694803
Target:  5'- aCCCGgUCGCCCcaGUGUCgCcUCCACaCCc -3'
miRNA:   3'- -GGGCgAGUGGG--CACAG-GcAGGUG-GGu -5'
10881 3' -60.6 NC_002794.1 + 70210 0.68 0.711791
Target:  5'- aUCCaGCUCGCCCGgacgGUCgGgcgggcggccggCCGCCCc -3'
miRNA:   3'- -GGG-CGAGUGGGCa---CAGgCa-----------GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 17372 0.68 0.713668
Target:  5'- aCCGUUCGCCCGagagCCcUCCGCCa- -3'
miRNA:   3'- gGGCGAGUGGGCaca-GGcAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 79871 0.68 0.713668
Target:  5'- uCCCGCUgGCCCGacagcacGUaCGUCCACUa- -3'
miRNA:   3'- -GGGCGAgUGGGCa------CAgGCAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 76592 0.68 0.713668
Target:  5'- aCCCGCUCuucgACCCGccggGUCguCGUCaguaGCCCu -3'
miRNA:   3'- -GGGCGAG----UGGGCa---CAG--GCAGg---UGGGu -5'
10881 3' -60.6 NC_002794.1 + 194511 0.69 0.646958
Target:  5'- gCCCGCg-GCCCGcGUgCCGcCgGCCCAg -3'
miRNA:   3'- -GGGCGagUGGGCaCA-GGCaGgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 76446 0.69 0.657537
Target:  5'- cCCCGa--GCCCGUGgcgcccgccccuccaCCGUCCGCCg- -3'
miRNA:   3'- -GGGCgagUGGGCACa--------------GGCAGGUGGgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.