miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 24215 1.09 0.001748
Target:  5'- gCCCGCUCACCCGUGUCCGUCCACCCAc -3'
miRNA:   3'- -GGGCGAGUGGGCACAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 189977 0.87 0.053947
Target:  5'- gCCCGCUCGCCCGacgGUCCGUCCggguccaucgGCCCGu -3'
miRNA:   3'- -GGGCGAGUGGGCa--CAGGCAGG----------UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 137111 0.77 0.234191
Target:  5'- uUCCGCgaccuccCGCCCGaacugucGUCCGUCCGCCCGc -3'
miRNA:   3'- -GGGCGa------GUGGGCa------CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 193718 0.77 0.262245
Target:  5'- gCCCGCccCGCCgGUGUCCucgCCGCCCGc -3'
miRNA:   3'- -GGGCGa-GUGGgCACAGGca-GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 27559 0.76 0.268173
Target:  5'- gCCCGUguuccaUCGCCCaucGUCCGUCCAUCCGu -3'
miRNA:   3'- -GGGCG------AGUGGGca-CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 191186 0.76 0.280354
Target:  5'- uCgCGCUCGCCCGg--CCGcCCGCCCGc -3'
miRNA:   3'- -GgGCGAGUGGGCacaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 193421 0.76 0.299444
Target:  5'- gCCGC-CGCCCGUcguccagccGUCCGgcacgCCGCCCAc -3'
miRNA:   3'- gGGCGaGUGGGCA---------CAGGCa----GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 181511 0.75 0.333462
Target:  5'- -aCGCUCGuCCaCGUcGUCCGUUCGCCCGc -3'
miRNA:   3'- ggGCGAGU-GG-GCA-CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 70347 0.75 0.340597
Target:  5'- gCCGggCGCCCGcucGUCCGcCCACCCGc -3'
miRNA:   3'- gGGCgaGUGGGCa--CAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 189566 0.75 0.341316
Target:  5'- uCCCGCUCggucggccgGCCCGggccggcgccccuuaGcCCGUCCGCCCGa -3'
miRNA:   3'- -GGGCGAG---------UGGGCa--------------CaGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 41759 0.74 0.377907
Target:  5'- gCCCGCUUccacggagaucaGCCCGgccgcGUCCuuGUCCACCCc -3'
miRNA:   3'- -GGGCGAG------------UGGGCa----CAGG--CAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 78165 0.73 0.401574
Target:  5'- gCCGCgagCGCUCGUaacCCGUCCGCCCc -3'
miRNA:   3'- gGGCGa--GUGGGCAca-GGCAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 63861 0.73 0.40967
Target:  5'- uCCCGCUCcCgCCGUcUCCGUCaACCCGc -3'
miRNA:   3'- -GGGCGAGuG-GGCAcAGGCAGgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 77914 0.73 0.417867
Target:  5'- cCCCGUUCgACCCG-GUCCG-CCgaaACCCGc -3'
miRNA:   3'- -GGGCGAG-UGGGCaCAGGCaGG---UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 191245 0.73 0.417867
Target:  5'- aCCGUUCGCCCGa-UCCGgacgccCCACCCGc -3'
miRNA:   3'- gGGCGAGUGGGCacAGGCa-----GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 189925 0.72 0.443045
Target:  5'- gCCCGCUCGCCCGacggCCG-CCgauggACCCGg -3'
miRNA:   3'- -GGGCGAGUGGGCaca-GGCaGG-----UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 60064 0.72 0.451625
Target:  5'- gCCGC-CGCaCCGUG-CCG-CCGCCCGc -3'
miRNA:   3'- gGGCGaGUG-GGCACaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 31332 0.72 0.451625
Target:  5'- gUCgGCUCggcGCCCGccgUGUCCG-CCGCCCGc -3'
miRNA:   3'- -GGgCGAG---UGGGC---ACAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 66289 0.72 0.451625
Target:  5'- gUCCGagCGCCCG--UCCGUCCGCCCu -3'
miRNA:   3'- -GGGCgaGUGGGCacAGGCAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 69255 0.72 0.459425
Target:  5'- gCCCGCUCGcgcuccguacguuCCCG-GUCCG-CCGCCgAa -3'
miRNA:   3'- -GGGCGAGU-------------GGGCaCAGGCaGGUGGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.