miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 68676 0.72 0.469055
Target:  5'- cCCCGCU--CCCGUGgCCGccCCACCCc -3'
miRNA:   3'- -GGGCGAguGGGCACaGGCa-GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 16980 0.71 0.494921
Target:  5'- gCCCGUUCaucaucuACCCGUcaUCGUUCACCCGg -3'
miRNA:   3'- -GGGCGAG-------UGGGCAcaGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 34928 0.71 0.495824
Target:  5'- cCCCGCUCcuCCCGg--CUGUCCccgGCCCGc -3'
miRNA:   3'- -GGGCGAGu-GGGCacaGGCAGG---UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 65389 0.71 0.504902
Target:  5'- gCCCcCUCACCCGguuUCCGUCC-CUCGc -3'
miRNA:   3'- -GGGcGAGUGGGCac-AGGCAGGuGGGU- -5'
10881 3' -60.6 NC_002794.1 + 7968 0.71 0.541877
Target:  5'- cCCCGCUUACuCCGgGcCuCGUCC-CCCAu -3'
miRNA:   3'- -GGGCGAGUG-GGCaCaG-GCAGGuGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131342 0.71 0.541877
Target:  5'- gCCCGUcgugacgguuUCGCCCGUGaucaCCGcUUCGCCCGu -3'
miRNA:   3'- -GGGCG----------AGUGGGCACa---GGC-AGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 146378 0.71 0.541877
Target:  5'- gUCCGCUCguccagacacGCUCGUccGUCCGaucgUCCGCCCGc -3'
miRNA:   3'- -GGGCGAG----------UGGGCA--CAGGC----AGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 131299 0.7 0.560706
Target:  5'- cUCCGC-CGCCCGUGgUCGUCaccuCGCCCu -3'
miRNA:   3'- -GGGCGaGUGGGCACaGGCAG----GUGGGu -5'
10881 3' -60.6 NC_002794.1 + 67267 0.7 0.560706
Target:  5'- uCCCGCUC-CCCGgGUCCGaagCgACUCGc -3'
miRNA:   3'- -GGGCGAGuGGGCaCAGGCa--GgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 62739 0.7 0.570188
Target:  5'- uCCCGC-CGCCCGcGgCCGUCuCGCuCCGg -3'
miRNA:   3'- -GGGCGaGUGGGCaCaGGCAG-GUG-GGU- -5'
10881 3' -60.6 NC_002794.1 + 10241 0.7 0.579709
Target:  5'- cCCCGC-CGuCUCGUGUCCGUUCGagcuuuCCCu -3'
miRNA:   3'- -GGGCGaGU-GGGCACAGGCAGGU------GGGu -5'
10881 3' -60.6 NC_002794.1 + 83784 0.7 0.579709
Target:  5'- gCCGC-CGCCgCGUccgCCGUCCugCCGc -3'
miRNA:   3'- gGGCGaGUGG-GCAca-GGCAGGugGGU- -5'
10881 3' -60.6 NC_002794.1 + 69054 0.7 0.579709
Target:  5'- cUCCGCUCGCCaCGggccgCCGccggCCGCCCu -3'
miRNA:   3'- -GGGCGAGUGG-GCaca--GGCa---GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 183466 0.7 0.579709
Target:  5'- gCCCGCcCGCCgCGaGUCCG-CgGCCCGa -3'
miRNA:   3'- -GGGCGaGUGG-GCaCAGGCaGgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 184119 0.7 0.583528
Target:  5'- cCCCGCUCGCcggcgucacguagaCCGUGgcguucggaUCCGccggcgacggcgucUCCACCCGa -3'
miRNA:   3'- -GGGCGAGUG--------------GGCAC---------AGGC--------------AGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 63910 0.69 0.60845
Target:  5'- gUCGCUCGCgCCGcGaCCG-CCGCCCGg -3'
miRNA:   3'- gGGCGAGUG-GGCaCaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 13460 0.69 0.60845
Target:  5'- cCCCGCUCGCUC-UGgccaCCGcUCCcCCCAg -3'
miRNA:   3'- -GGGCGAGUGGGcACa---GGC-AGGuGGGU- -5'
10881 3' -60.6 NC_002794.1 + 7570 0.69 0.617107
Target:  5'- cCCCGgUCACCCacucgagcgucgcGUGagCCGccCCACCCAc -3'
miRNA:   3'- -GGGCgAGUGGG-------------CACa-GGCa-GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 195468 0.69 0.627698
Target:  5'- cCCCGCUUGCCCGgacUCGcCCGCCg- -3'
miRNA:   3'- -GGGCGAGUGGGCacaGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 22365 0.69 0.63733
Target:  5'- uCCCGCUCAcCCCG-GUCCcGaUCCGgUCGg -3'
miRNA:   3'- -GGGCGAGU-GGGCaCAGG-C-AGGUgGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.