Results 81 - 100 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10881 | 3' | -60.6 | NC_002794.1 | + | 115344 | 0.66 | 0.77472 |
Target: 5'- gCCGCUCGgCac-GUCCaggcgacagagcgcGUCCACCCAu -3' miRNA: 3'- gGGCGAGUgGgcaCAGG--------------CAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 86702 | 0.66 | 0.776476 |
Target: 5'- gCCCGgUCGCUCGUcgaagccGcCCGgCCACCUAg -3' miRNA: 3'- -GGGCgAGUGGGCA-------CaGGCaGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 74009 | 0.66 | 0.777352 |
Target: 5'- cCCaCGCUgCGCCUGUucggCCG-CCACCCc -3' miRNA: 3'- -GG-GCGA-GUGGGCAca--GGCaGGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 67140 | 0.66 | 0.777352 |
Target: 5'- -gCGCUCGCggauauacgCCGUGUCCGUgCuguuggccaagaGCCCGa -3' miRNA: 3'- ggGCGAGUG---------GGCACAGGCAgG------------UGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 189888 | 0.66 | 0.777352 |
Target: 5'- gCCCGCUCggGCCCGccGUCagcgCCGCCg- -3' miRNA: 3'- -GGGCGAG--UGGGCa-CAGgca-GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 28674 | 0.66 | 0.78605 |
Target: 5'- aCCGC-CGCCgGUGgCCGUcgCCGCCg- -3' miRNA: 3'- gGGCGaGUGGgCACaGGCA--GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 148900 | 0.66 | 0.78605 |
Target: 5'- --gGCUCGUCCGcUGUCUGUUCACCUu -3' miRNA: 3'- gggCGAGUGGGC-ACAGGCAGGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 101955 | 0.66 | 0.794626 |
Target: 5'- cCCUGCcUGCCCGUGgcggCGUCCAUCa- -3' miRNA: 3'- -GGGCGaGUGGGCACag--GCAGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 73789 | 0.66 | 0.794626 |
Target: 5'- uCCUGCUgUACCCGUccCCGaCCACCg- -3' miRNA: 3'- -GGGCGA-GUGGGCAcaGGCaGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 133261 | 0.66 | 0.800552 |
Target: 5'- gCUCGCUCACCgggagacucgcgUGUgcgcgcggcuaucuGUUCGUCCGCUCAc -3' miRNA: 3'- -GGGCGAGUGG------------GCA--------------CAGGCAGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 51204 | 0.66 | 0.803072 |
Target: 5'- uUCGCUCGCCCGcGgagcggCCGgCCGgCCGa -3' miRNA: 3'- gGGCGAGUGGGCaCa-----GGCaGGUgGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 20842 | 0.66 | 0.803072 |
Target: 5'- aCCCGC-CACCUGauccUGcgCuCGUgCCACCCGu -3' miRNA: 3'- -GGGCGaGUGGGC----ACa-G-GCA-GGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 147073 | 0.66 | 0.81138 |
Target: 5'- gCCGCgggCGCCCG-GUCCaaggacgaaggcGUCggCGCCCGg -3' miRNA: 3'- gGGCGa--GUGGGCaCAGG------------CAG--GUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 181760 | 0.66 | 0.81138 |
Target: 5'- gCCCGCUgACgCCGaUGgcgCCGcgCCGCCg- -3' miRNA: 3'- -GGGCGAgUG-GGC-ACa--GGCa-GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 185948 | 0.66 | 0.81138 |
Target: 5'- gCUCGCggccgCGCCCGUuUCCcuGUCCGuuCCCGg -3' miRNA: 3'- -GGGCGa----GUGGGCAcAGG--CAGGU--GGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 182056 | 0.66 | 0.81138 |
Target: 5'- uCCUGCgcguagggCGCCUGcGUCCGgucggCCACCg- -3' miRNA: 3'- -GGGCGa-------GUGGGCaCAGGCa----GGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 46255 | 0.66 | 0.819545 |
Target: 5'- gUCCGCUUcCUCGgg-CCGUCgACCCc -3' miRNA: 3'- -GGGCGAGuGGGCacaGGCAGgUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 92046 | 0.66 | 0.819545 |
Target: 5'- gCCGUgaACCUGUGUCCGgcgugCCGCggCCGg -3' miRNA: 3'- gGGCGagUGGGCACAGGCa----GGUG--GGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 194402 | 0.66 | 0.819545 |
Target: 5'- gCCCGgUCGuuCGcGUCCG-CCACCg- -3' miRNA: 3'- -GGGCgAGUggGCaCAGGCaGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 29190 | 0.66 | 0.827559 |
Target: 5'- uUCGgUCACCa--GUCCGUCCGUCCGg -3' miRNA: 3'- gGGCgAGUGGgcaCAGGCAGGUGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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