Results 61 - 80 of 102 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
10881 | 3' | -60.6 | NC_002794.1 | + | 194511 | 0.69 | 0.646958 |
Target: 5'- gCCCGCg-GCCCGcGUgCCGcCgGCCCAg -3' miRNA: 3'- -GGGCGagUGGGCaCA-GGCaGgUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 78061 | 0.69 | 0.646958 |
Target: 5'- gCCCGCcgcCGCCCGaacgCCGgccgCCGCCCu -3' miRNA: 3'- -GGGCGa--GUGGGCaca-GGCa---GGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 22365 | 0.69 | 0.63733 |
Target: 5'- uCCCGCUCAcCCCG-GUCCcGaUCCGgUCGg -3' miRNA: 3'- -GGGCGAGU-GGGCaCAGG-C-AGGUgGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 195468 | 0.69 | 0.627698 |
Target: 5'- cCCCGCUUGCCCGgacUCGcCCGCCg- -3' miRNA: 3'- -GGGCGAGUGGGCacaGGCaGGUGGgu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 7570 | 0.69 | 0.617107 |
Target: 5'- cCCCGgUCACCCacucgagcgucgcGUGagCCGccCCACCCAc -3' miRNA: 3'- -GGGCgAGUGGG-------------CACa-GGCa-GGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 13460 | 0.69 | 0.60845 |
Target: 5'- cCCCGCUCGCUC-UGgccaCCGcUCCcCCCAg -3' miRNA: 3'- -GGGCGAGUGGGcACa---GGC-AGGuGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 63910 | 0.69 | 0.60845 |
Target: 5'- gUCGCUCGCgCCGcGaCCG-CCGCCCGg -3' miRNA: 3'- gGGCGAGUG-GGCaCaGGCaGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 184119 | 0.7 | 0.583528 |
Target: 5'- cCCCGCUCGCcggcgucacguagaCCGUGgcguucggaUCCGccggcgacggcgucUCCACCCGa -3' miRNA: 3'- -GGGCGAGUG--------------GGCAC---------AGGC--------------AGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 69054 | 0.7 | 0.579709 |
Target: 5'- cUCCGCUCGCCaCGggccgCCGccggCCGCCCu -3' miRNA: 3'- -GGGCGAGUGG-GCaca--GGCa---GGUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 10241 | 0.7 | 0.579709 |
Target: 5'- cCCCGC-CGuCUCGUGUCCGUUCGagcuuuCCCu -3' miRNA: 3'- -GGGCGaGU-GGGCACAGGCAGGU------GGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 183466 | 0.7 | 0.579709 |
Target: 5'- gCCCGCcCGCCgCGaGUCCG-CgGCCCGa -3' miRNA: 3'- -GGGCGaGUGG-GCaCAGGCaGgUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 83784 | 0.7 | 0.579709 |
Target: 5'- gCCGC-CGCCgCGUccgCCGUCCugCCGc -3' miRNA: 3'- gGGCGaGUGG-GCAca-GGCAGGugGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 62739 | 0.7 | 0.570188 |
Target: 5'- uCCCGC-CGCCCGcGgCCGUCuCGCuCCGg -3' miRNA: 3'- -GGGCGaGUGGGCaCaGGCAG-GUG-GGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 131299 | 0.7 | 0.560706 |
Target: 5'- cUCCGC-CGCCCGUGgUCGUCaccuCGCCCu -3' miRNA: 3'- -GGGCGaGUGGGCACaGGCAG----GUGGGu -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 67267 | 0.7 | 0.560706 |
Target: 5'- uCCCGCUC-CCCGgGUCCGaagCgACUCGc -3' miRNA: 3'- -GGGCGAGuGGGCaCAGGCa--GgUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 7968 | 0.71 | 0.541877 |
Target: 5'- cCCCGCUUACuCCGgGcCuCGUCC-CCCAu -3' miRNA: 3'- -GGGCGAGUG-GGCaCaG-GCAGGuGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 146378 | 0.71 | 0.541877 |
Target: 5'- gUCCGCUCguccagacacGCUCGUccGUCCGaucgUCCGCCCGc -3' miRNA: 3'- -GGGCGAG----------UGGGCA--CAGGC----AGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 131342 | 0.71 | 0.541877 |
Target: 5'- gCCCGUcgugacgguuUCGCCCGUGaucaCCGcUUCGCCCGu -3' miRNA: 3'- -GGGCG----------AGUGGGCACa---GGC-AGGUGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 65389 | 0.71 | 0.504902 |
Target: 5'- gCCCcCUCACCCGguuUCCGUCC-CUCGc -3' miRNA: 3'- -GGGcGAGUGGGCac-AGGCAGGuGGGU- -5' |
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10881 | 3' | -60.6 | NC_002794.1 | + | 34928 | 0.71 | 0.495824 |
Target: 5'- cCCCGCUCcuCCCGg--CUGUCCccgGCCCGc -3' miRNA: 3'- -GGGCGAGu-GGGCacaGGCAGG---UGGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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