miRNA display CGI


Results 1 - 20 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 7570 0.69 0.617107
Target:  5'- cCCCGgUCACCCacucgagcgucgcGUGagCCGccCCACCCAc -3'
miRNA:   3'- -GGGCgAGUGGG-------------CACa-GGCa-GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 7968 0.71 0.541877
Target:  5'- cCCCGCUUACuCCGgGcCuCGUCC-CCCAu -3'
miRNA:   3'- -GGGCGAGUG-GGCaCaG-GCAGGuGGGU- -5'
10881 3' -60.6 NC_002794.1 + 10241 0.7 0.579709
Target:  5'- cCCCGC-CGuCUCGUGUCCGUUCGagcuuuCCCu -3'
miRNA:   3'- -GGGCGaGU-GGGCACAGGCAGGU------GGGu -5'
10881 3' -60.6 NC_002794.1 + 13135 0.66 0.827559
Target:  5'- gCUCGCUCGCgCGggucgucgCCGUCCcaugccgcacACCCAc -3'
miRNA:   3'- -GGGCGAGUGgGCaca-----GGCAGG----------UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 13460 0.69 0.60845
Target:  5'- cCCCGCUCGCUC-UGgccaCCGcUCCcCCCAg -3'
miRNA:   3'- -GGGCGAGUGGGcACa---GGC-AGGuGGGU- -5'
10881 3' -60.6 NC_002794.1 + 16980 0.71 0.494921
Target:  5'- gCCCGUUCaucaucuACCCGUcaUCGUUCACCCGg -3'
miRNA:   3'- -GGGCGAG-------UGGGCAcaGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 17372 0.68 0.713668
Target:  5'- aCCGUUCGCCCGagagCCcUCCGCCa- -3'
miRNA:   3'- gGGCGAGUGGGCaca-GGcAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 17956 0.67 0.723012
Target:  5'- aCCCGCgacUCGCCCGgg-CCGUgagCCuggcGCCCAc -3'
miRNA:   3'- -GGGCG---AGUGGGCacaGGCA---GG----UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 19362 0.67 0.766763
Target:  5'- gCCCGCccCGCCCGgaucgGgcgggCCGgucaccccucagCCACCCAc -3'
miRNA:   3'- -GGGCGa-GUGGGCa----Ca----GGCa-----------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 20842 0.66 0.803072
Target:  5'- aCCCGC-CACCUGauccUGcgCuCGUgCCACCCGu -3'
miRNA:   3'- -GGGCGaGUGGGC----ACa-G-GCA-GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 22365 0.69 0.63733
Target:  5'- uCCCGCUCAcCCCG-GUCCcGaUCCGgUCGg -3'
miRNA:   3'- -GGGCGAGU-GGGCaCAGG-C-AGGUgGGU- -5'
10881 3' -60.6 NC_002794.1 + 24021 0.67 0.768539
Target:  5'- aCCGCggCGCCuCGgcgacggcgGUcccuccCCGUCCGCCCGc -3'
miRNA:   3'- gGGCGa-GUGG-GCa--------CA------GGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 24215 1.09 0.001748
Target:  5'- gCCCGCUCACCCGUGUCCGUCCACCCAc -3'
miRNA:   3'- -GGGCGAGUGGGCACAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 26599 0.67 0.759618
Target:  5'- uCCCGCUCGcgccccgccCCCGcGUCCcccaccguccgcGUCCGCgCAc -3'
miRNA:   3'- -GGGCGAGU---------GGGCaCAGG------------CAGGUGgGU- -5'
10881 3' -60.6 NC_002794.1 + 27559 0.76 0.268173
Target:  5'- gCCCGUguuccaUCGCCCaucGUCCGUCCAUCCGu -3'
miRNA:   3'- -GGGCG------AGUGGGca-CAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 28674 0.66 0.78605
Target:  5'- aCCGC-CGCCgGUGgCCGUcgCCGCCg- -3'
miRNA:   3'- gGGCGaGUGGgCACaGGCA--GGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 29190 0.66 0.827559
Target:  5'- uUCGgUCACCa--GUCCGUCCGUCCGg -3'
miRNA:   3'- gGGCgAGUGGgcaCAGGCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 31332 0.72 0.451625
Target:  5'- gUCgGCUCggcGCCCGccgUGUCCG-CCGCCCGc -3'
miRNA:   3'- -GGgCGAG---UGGGC---ACAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 31399 0.67 0.750597
Target:  5'- cCCCGCcgCGCCCGccgcGcCCG-CCGCCUu -3'
miRNA:   3'- -GGGCGa-GUGGGCa---CaGGCaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 34928 0.71 0.495824
Target:  5'- cCCCGCUCcuCCCGg--CUGUCCccgGCCCGc -3'
miRNA:   3'- -GGGCGAGu-GGGCacaGGCAGG---UGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.