miRNA display CGI


Results 21 - 40 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 36737 0.68 0.666177
Target:  5'- gCCCGUUCAcguagaacuCCCG-GUCCuGgcggacggCCACCCAg -3'
miRNA:   3'- -GGGCGAGU---------GGGCaCAGG-Ca-------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 39153 0.67 0.732286
Target:  5'- -aCGCUCACCC-UGUCUuUCCGacuCCCGa -3'
miRNA:   3'- ggGCGAGUGGGcACAGGcAGGU---GGGU- -5'
10881 3' -60.6 NC_002794.1 + 41759 0.74 0.377907
Target:  5'- gCCCGCUUccacggagaucaGCCCGgccgcGUCCuuGUCCACCCc -3'
miRNA:   3'- -GGGCGAG------------UGGGCa----CAGG--CAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 46198 0.67 0.741484
Target:  5'- aCCgCGCUCGCUCGccgCCGuUCCGgCCAg -3'
miRNA:   3'- -GG-GCGAGUGGGCacaGGC-AGGUgGGU- -5'
10881 3' -60.6 NC_002794.1 + 46255 0.66 0.819545
Target:  5'- gUCCGCUUcCUCGgg-CCGUCgACCCc -3'
miRNA:   3'- -GGGCGAGuGGGCacaGGCAGgUGGGu -5'
10881 3' -60.6 NC_002794.1 + 51204 0.66 0.803072
Target:  5'- uUCGCUCGCCCGcGgagcggCCGgCCGgCCGa -3'
miRNA:   3'- gGGCGAGUGGGCaCa-----GGCaGGUgGGU- -5'
10881 3' -60.6 NC_002794.1 + 60064 0.72 0.451625
Target:  5'- gCCGC-CGCaCCGUG-CCG-CCGCCCGc -3'
miRNA:   3'- gGGCGaGUG-GGCACaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 62739 0.7 0.570188
Target:  5'- uCCCGC-CGCCCGcGgCCGUCuCGCuCCGg -3'
miRNA:   3'- -GGGCGaGUGGGCaCaGGCAG-GUG-GGU- -5'
10881 3' -60.6 NC_002794.1 + 63861 0.73 0.40967
Target:  5'- uCCCGCUCcCgCCGUcUCCGUCaACCCGc -3'
miRNA:   3'- -GGGCGAGuG-GGCAcAGGCAGgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 63910 0.69 0.60845
Target:  5'- gUCGCUCGCgCCGcGaCCG-CCGCCCGg -3'
miRNA:   3'- gGGCGAGUG-GGCaCaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 65389 0.71 0.504902
Target:  5'- gCCCcCUCACCCGguuUCCGUCC-CUCGc -3'
miRNA:   3'- -GGGcGAGUGGGCac-AGGCAGGuGGGU- -5'
10881 3' -60.6 NC_002794.1 + 66289 0.72 0.451625
Target:  5'- gUCCGagCGCCCG--UCCGUCCGCCCu -3'
miRNA:   3'- -GGGCgaGUGGGCacAGGCAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 67140 0.66 0.777352
Target:  5'- -gCGCUCGCggauauacgCCGUGUCCGUgCuguuggccaagaGCCCGa -3'
miRNA:   3'- ggGCGAGUG---------GGCACAGGCAgG------------UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 67267 0.7 0.560706
Target:  5'- uCCCGCUC-CCCGgGUCCGaagCgACUCGc -3'
miRNA:   3'- -GGGCGAGuGGGCaCAGGCa--GgUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 67838 0.69 0.646958
Target:  5'- gCCCGCcgUCGCCCGgcgccgCCGcgcgUCACCCGg -3'
miRNA:   3'- -GGGCG--AGUGGGCaca---GGCa---GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 68676 0.72 0.469055
Target:  5'- cCCCGCU--CCCGUGgCCGccCCACCCc -3'
miRNA:   3'- -GGGCGAguGGGCACaGGCa-GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 69054 0.7 0.579709
Target:  5'- cUCCGCUCGCCaCGggccgCCGccggCCGCCCu -3'
miRNA:   3'- -GGGCGAGUGG-GCaca--GGCa---GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 69255 0.72 0.459425
Target:  5'- gCCCGCUCGcgcuccguacguuCCCG-GUCCG-CCGCCgAa -3'
miRNA:   3'- -GGGCGAGU-------------GGGCaCAGGCaGGUGGgU- -5'
10881 3' -60.6 NC_002794.1 + 69812 0.68 0.694803
Target:  5'- gCCCGC-CGCCgCGaccggCGUCCGCCCGg -3'
miRNA:   3'- -GGGCGaGUGG-GCacag-GCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 70210 0.68 0.711791
Target:  5'- aUCCaGCUCGCCCGgacgGUCgGgcgggcggccggCCGCCCc -3'
miRNA:   3'- -GGG-CGAGUGGGCa---CAGgCa-----------GGUGGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.