miRNA display CGI


Results 41 - 60 of 102 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
10881 3' -60.6 NC_002794.1 + 70347 0.75 0.340597
Target:  5'- gCCGggCGCCCGcucGUCCGcCCACCCGc -3'
miRNA:   3'- gGGCgaGUGGGCa--CAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 72811 0.67 0.748782
Target:  5'- gCCCGCUCcgucGCCCG--UCCGacggacggcagaCCACCCGa -3'
miRNA:   3'- -GGGCGAG----UGGGCacAGGCa-----------GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 73789 0.66 0.794626
Target:  5'- uCCUGCUgUACCCGUccCCGaCCACCg- -3'
miRNA:   3'- -GGGCGA-GUGGGCAcaGGCaGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 74009 0.66 0.777352
Target:  5'- cCCaCGCUgCGCCUGUucggCCG-CCACCCc -3'
miRNA:   3'- -GG-GCGA-GUGGGCAca--GGCaGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 76446 0.69 0.657537
Target:  5'- cCCCGa--GCCCGUGgcgcccgccccuccaCCGUCCGCCg- -3'
miRNA:   3'- -GGGCgagUGGGCACa--------------GGCAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 76592 0.68 0.713668
Target:  5'- aCCCGCUCuucgACCCGccggGUCguCGUCaguaGCCCu -3'
miRNA:   3'- -GGGCGAG----UGGGCa---CAG--GCAGg---UGGGu -5'
10881 3' -60.6 NC_002794.1 + 77914 0.73 0.417867
Target:  5'- cCCCGUUCgACCCG-GUCCG-CCgaaACCCGc -3'
miRNA:   3'- -GGGCGAG-UGGGCaCAGGCaGG---UGGGU- -5'
10881 3' -60.6 NC_002794.1 + 78061 0.69 0.646958
Target:  5'- gCCCGCcgcCGCCCGaacgCCGgccgCCGCCCu -3'
miRNA:   3'- -GGGCGa--GUGGGCaca-GGCa---GGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 78165 0.73 0.401574
Target:  5'- gCCGCgagCGCUCGUaacCCGUCCGCCCc -3'
miRNA:   3'- gGGCGa--GUGGGCAca-GGCAGGUGGGu -5'
10881 3' -60.6 NC_002794.1 + 78923 0.67 0.741484
Target:  5'- uCCCGUcgggCACCCGccgCCGgcaggUCACCCAg -3'
miRNA:   3'- -GGGCGa---GUGGGCacaGGCa----GGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 79871 0.68 0.713668
Target:  5'- uCCCGCUgGCCCGacagcacGUaCGUCCACUa- -3'
miRNA:   3'- -GGGCGAgUGGGCa------CAgGCAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 81641 0.67 0.759618
Target:  5'- uCCUGCgCA-CCGUcGUCUGgCCGCCCAu -3'
miRNA:   3'- -GGGCGaGUgGGCA-CAGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 82414 0.67 0.732286
Target:  5'- gCUCGC-CGCCCGUcUUCGUCUuCCCu -3'
miRNA:   3'- -GGGCGaGUGGGCAcAGGCAGGuGGGu -5'
10881 3' -60.6 NC_002794.1 + 83784 0.7 0.579709
Target:  5'- gCCGC-CGCCgCGUccgCCGUCCugCCGc -3'
miRNA:   3'- gGGCGaGUGG-GCAca-GGCAGGugGGU- -5'
10881 3' -60.6 NC_002794.1 + 86702 0.66 0.776476
Target:  5'- gCCCGgUCGCUCGUcgaagccGcCCGgCCACCUAg -3'
miRNA:   3'- -GGGCgAGUGGGCA-------CaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 92046 0.66 0.819545
Target:  5'- gCCGUgaACCUGUGUCCGgcgugCCGCggCCGg -3'
miRNA:   3'- gGGCGagUGGGCACAGGCa----GGUG--GGU- -5'
10881 3' -60.6 NC_002794.1 + 101955 0.66 0.794626
Target:  5'- cCCUGCcUGCCCGUGgcggCGUCCAUCa- -3'
miRNA:   3'- -GGGCGaGUGGGCACag--GCAGGUGGgu -5'
10881 3' -60.6 NC_002794.1 + 109698 0.68 0.666177
Target:  5'- cCCCGgUCAgCCCGc--CCGcCCGCCCGu -3'
miRNA:   3'- -GGGCgAGU-GGGCacaGGCaGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 109873 0.67 0.741484
Target:  5'- gCUCGCUCGCCCGUGcucgugaaggcUCgcagaugcuCGUUCGCUCGa -3'
miRNA:   3'- -GGGCGAGUGGGCAC-----------AG---------GCAGGUGGGU- -5'
10881 3' -60.6 NC_002794.1 + 115344 0.66 0.77472
Target:  5'- gCCGCUCGgCac-GUCCaggcgacagagcgcGUCCACCCAu -3'
miRNA:   3'- gGGCGAGUgGgcaCAGG--------------CAGGUGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.